Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21436 and SM_b21437 overlap by 4 nucleotides SM_b21437 and SM_b21438 are separated by 83 nucleotides
SM_b21436: SM_b21436 - C4-dicarboxylate transport system, permease large protein transmembrane, at 1,366,387 to 1,367,667
_b21436
SM_b21437: SM_b21437 - C4-dicarboxylate transport system, permease small protein transmembrane, at 1,367,664 to 1,368,140
_b21437
SM_b21438: SM_b21438 - C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide, at 1,368,224 to 1,369,222
_b21438
Position (kb)
1367
1368
1369 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1366.896 kb on - strand, within SM_b21436 at 1366.896 kb on - strand, within SM_b21436 at 1366.896 kb on - strand, within SM_b21436 at 1366.922 kb on + strand, within SM_b21436 at 1366.922 kb on + strand, within SM_b21436 at 1367.200 kb on + strand, within SM_b21436 at 1367.200 kb on + strand, within SM_b21436 at 1367.201 kb on - strand, within SM_b21436 at 1367.201 kb on - strand, within SM_b21436 at 1367.551 kb on + strand at 1367.552 kb on - strand at 1367.570 kb on + strand at 1367.731 kb on + strand, within SM_b21437 at 1367.790 kb on + strand, within SM_b21437 at 1367.790 kb on + strand, within SM_b21437 at 1367.791 kb on - strand, within SM_b21437 at 1367.850 kb on + strand, within SM_b21437 at 1368.017 kb on - strand, within SM_b21437 at 1368.087 kb on + strand, within SM_b21437 at 1368.096 kb on + strand at 1368.097 kb on - strand at 1368.097 kb on - strand at 1368.097 kb on - strand at 1368.097 kb on - strand at 1368.225 kb on + strand at 1368.225 kb on + strand at 1368.235 kb on - strand at 1368.529 kb on - strand, within SM_b21438 at 1368.529 kb on - strand, within SM_b21438 at 1368.543 kb on + strand, within SM_b21438 at 1368.543 kb on + strand, within SM_b21438 at 1368.616 kb on - strand, within SM_b21438 at 1368.617 kb on + strand, within SM_b21438 at 1368.617 kb on + strand, within SM_b21438 at 1368.618 kb on - strand, within SM_b21438 at 1368.618 kb on - strand, within SM_b21438 at 1368.879 kb on + strand, within SM_b21438 at 1368.880 kb on - strand, within SM_b21438 at 1368.880 kb on - strand, within SM_b21438 at 1368.959 kb on + strand, within SM_b21438 at 1368.959 kb on + strand, within SM_b21438 at 1368.959 kb on + strand, within SM_b21438 at 1369.087 kb on + strand, within SM_b21438 at 1369.088 kb on - strand, within SM_b21438
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,366,896 - SM_b21436 0.40 +0.2 1,366,896 - SM_b21436 0.40 +0.0 1,366,896 - SM_b21436 0.40 +3.8 1,366,922 + SM_b21436 0.42 +0.6 1,366,922 + SM_b21436 0.42 -1.3 1,367,200 + SM_b21436 0.63 -0.2 1,367,200 + SM_b21436 0.63 -0.6 1,367,201 - SM_b21436 0.64 +0.5 1,367,201 - SM_b21436 0.64 +0.5 1,367,551 + -0.2 1,367,552 - -0.8 1,367,570 + -0.1 1,367,731 + SM_b21437 0.14 -0.8 1,367,790 + SM_b21437 0.26 -1.1 1,367,790 + SM_b21437 0.26 +1.8 1,367,791 - SM_b21437 0.27 -0.1 1,367,850 + SM_b21437 0.39 +1.2 1,368,017 - SM_b21437 0.74 +0.4 1,368,087 + SM_b21437 0.89 +0.1 1,368,096 + +0.0 1,368,097 - +0.3 1,368,097 - -0.0 1,368,097 - +0.6 1,368,097 - -1.2 1,368,225 + -0.6 1,368,225 + -0.4 1,368,235 - -2.8 1,368,529 - SM_b21438 0.31 -0.7 1,368,529 - SM_b21438 0.31 -1.0 1,368,543 + SM_b21438 0.32 -0.3 1,368,543 + SM_b21438 0.32 +0.7 1,368,616 - SM_b21438 0.39 +0.8 1,368,617 + SM_b21438 0.39 -0.2 1,368,617 + SM_b21438 0.39 -0.4 1,368,618 - SM_b21438 0.39 -0.7 1,368,618 - SM_b21438 0.39 +0.0 1,368,879 + SM_b21438 0.66 -0.5 1,368,880 - SM_b21438 0.66 +0.1 1,368,880 - SM_b21438 0.66 -0.0 1,368,959 + SM_b21438 0.74 -0.4 1,368,959 + SM_b21438 0.74 -0.6 1,368,959 + SM_b21438 0.74 -0.3 1,369,087 + SM_b21438 0.86 +1.3 1,369,088 - SM_b21438 0.86 -0.3
Or see this region's nucleotide sequence