Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21417 and SM_b21418 are separated by 6 nucleotides SM_b21418 and SM_b21419 are separated by 22 nucleotides SM_b21419 and SM_b21684 are separated by 21 nucleotides
SM_b21417: SM_b21417 - CDP-glucose 4,6-dehydratase, at 1,346,712 to 1,347,782
_b21417
SM_b21418: SM_b21418 - NDP-hexose 3-C-methyltransferase, at 1,347,789 to 1,349,021
_b21418
SM_b21419: SM_b21419 - AraC family transcriptional regulator, at 1,349,044 to 1,349,931
_b21419
SM_b21684: SM_b21684 - hypothetical protein, at 1,349,953 to 1,350,180
_b21684
Position (kb)
1347
1348
1349
1350 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.836 kb on - strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.918 kb on - strand, within SM_b21417 at 1346.979 kb on - strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.127 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.248 kb on + strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.429 kb on + strand, within SM_b21417 at 1347.705 kb on + strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.781 kb on - strand at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.050 kb on + strand, within SM_b21418 at 1348.138 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.437 kb on + strand, within SM_b21418 at 1348.449 kb on + strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.455 kb on + strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.481 kb on + strand, within SM_b21418 at 1348.482 kb on - strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418 at 1348.872 kb on + strand, within SM_b21418 at 1348.872 kb on + strand, within SM_b21418 at 1348.873 kb on - strand, within SM_b21418 at 1348.908 kb on + strand at 1348.908 kb on + strand at 1348.909 kb on - strand at 1348.909 kb on - strand at 1348.909 kb on - strand at 1348.962 kb on + strand at 1348.962 kb on + strand at 1348.963 kb on - strand at 1348.963 kb on - strand at 1348.963 kb on - strand at 1348.964 kb on + strand at 1349.076 kb on - strand at 1349.166 kb on + strand, within SM_b21419 at 1349.166 kb on + strand, within SM_b21419 at 1349.167 kb on - strand, within SM_b21419 at 1349.167 kb on - strand, within SM_b21419 at 1349.172 kb on + strand, within SM_b21419 at 1349.172 kb on + strand, within SM_b21419 at 1349.178 kb on + strand, within SM_b21419 at 1349.178 kb on + strand, within SM_b21419 at 1349.260 kb on + strand, within SM_b21419 at 1349.261 kb on - strand, within SM_b21419 at 1349.274 kb on - strand, within SM_b21419 at 1349.279 kb on + strand, within SM_b21419 at 1349.279 kb on + strand, within SM_b21419 at 1349.280 kb on - strand, within SM_b21419 at 1349.280 kb on - strand, within SM_b21419 at 1349.413 kb on + strand, within SM_b21419 at 1349.413 kb on + strand, within SM_b21419 at 1349.443 kb on + strand, within SM_b21419 at 1349.444 kb on - strand, within SM_b21419 at 1349.444 kb on - strand, within SM_b21419 at 1349.444 kb on - strand, within SM_b21419 at 1349.551 kb on + strand, within SM_b21419 at 1349.552 kb on - strand, within SM_b21419 at 1349.552 kb on - strand, within SM_b21419 at 1349.597 kb on - strand, within SM_b21419 at 1349.836 kb on + strand, within SM_b21419 at 1349.903 kb on + strand at 1350.010 kb on - strand, within SM_b21684
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,346,800 + -0.2 1,346,800 + -1.7 1,346,800 + +0.4 1,346,800 + +0.8 1,346,801 - +0.7 1,346,801 - +0.7 1,346,801 - +0.1 1,346,801 - +0.1 1,346,801 - -0.8 1,346,836 - SM_b21417 0.12 -0.9 1,346,917 + SM_b21417 0.19 +0.8 1,346,917 + SM_b21417 0.19 +1.3 1,346,917 + SM_b21417 0.19 +0.3 1,346,918 - SM_b21417 0.19 +0.3 1,346,979 - SM_b21417 0.25 +1.0 1,347,009 + SM_b21417 0.28 +0.0 1,347,009 + SM_b21417 0.28 +0.8 1,347,009 + SM_b21417 0.28 +0.4 1,347,010 - SM_b21417 0.28 -0.1 1,347,010 - SM_b21417 0.28 +0.3 1,347,127 - SM_b21417 0.39 +1.5 1,347,244 - SM_b21417 0.50 -1.6 1,347,244 - SM_b21417 0.50 +0.1 1,347,244 - SM_b21417 0.50 -0.5 1,347,248 + SM_b21417 0.50 -0.7 1,347,249 - SM_b21417 0.50 +0.3 1,347,249 - SM_b21417 0.50 -0.6 1,347,429 + SM_b21417 0.67 -0.4 1,347,705 + +0.2 1,347,758 - -0.8 1,347,758 - +0.1 1,347,758 - -0.8 1,347,758 - +1.8 1,347,781 - +0.2 1,348,005 + SM_b21418 0.18 -0.1 1,348,005 + SM_b21418 0.18 -0.0 1,348,005 + SM_b21418 0.18 +2.4 1,348,005 + SM_b21418 0.18 +0.7 1,348,005 + SM_b21418 0.18 +0.6 1,348,005 + SM_b21418 0.18 +0.6 1,348,006 - SM_b21418 0.18 +1.4 1,348,006 - SM_b21418 0.18 +0.0 1,348,006 - SM_b21418 0.18 +1.2 1,348,006 - SM_b21418 0.18 -0.2 1,348,050 + SM_b21418 0.21 -0.3 1,348,138 - SM_b21418 0.28 +0.5 1,348,380 - SM_b21418 0.48 +0.4 1,348,380 - SM_b21418 0.48 +0.3 1,348,437 + SM_b21418 0.53 -1.7 1,348,449 + SM_b21418 0.54 +0.8 1,348,450 - SM_b21418 0.54 +0.3 1,348,450 - SM_b21418 0.54 +0.0 1,348,450 - SM_b21418 0.54 +0.2 1,348,450 - SM_b21418 0.54 -0.3 1,348,455 + SM_b21418 0.54 +1.4 1,348,456 - SM_b21418 0.54 +0.2 1,348,456 - SM_b21418 0.54 -0.7 1,348,481 + SM_b21418 0.56 +0.2 1,348,482 - SM_b21418 0.56 +8.3 1,348,650 + SM_b21418 0.70 +0.4 1,348,650 + SM_b21418 0.70 +0.1 1,348,872 + SM_b21418 0.88 +1.8 1,348,872 + SM_b21418 0.88 +0.4 1,348,873 - SM_b21418 0.88 +2.1 1,348,908 + +1.0 1,348,908 + -0.3 1,348,909 - +0.8 1,348,909 - -0.5 1,348,909 - -0.4 1,348,962 + +1.2 1,348,962 + -1.4 1,348,963 - +0.2 1,348,963 - +1.7 1,348,963 - +0.3 1,348,964 + -1.1 1,349,076 - -0.6 1,349,166 + SM_b21419 0.14 +0.4 1,349,166 + SM_b21419 0.14 +0.9 1,349,167 - SM_b21419 0.14 -0.9 1,349,167 - SM_b21419 0.14 +0.2 1,349,172 + SM_b21419 0.14 -0.9 1,349,172 + SM_b21419 0.14 -0.3 1,349,178 + SM_b21419 0.15 +0.4 1,349,178 + SM_b21419 0.15 -2.0 1,349,260 + SM_b21419 0.24 -1.3 1,349,261 - SM_b21419 0.24 -0.2 1,349,274 - SM_b21419 0.26 +0.4 1,349,279 + SM_b21419 0.26 -0.8 1,349,279 + SM_b21419 0.26 -0.1 1,349,280 - SM_b21419 0.27 -1.2 1,349,280 - SM_b21419 0.27 +0.2 1,349,413 + SM_b21419 0.42 +0.9 1,349,413 + SM_b21419 0.42 -0.8 1,349,443 + SM_b21419 0.45 -1.3 1,349,444 - SM_b21419 0.45 -1.2 1,349,444 - SM_b21419 0.45 +1.8 1,349,444 - SM_b21419 0.45 -0.5 1,349,551 + SM_b21419 0.57 +0.7 1,349,552 - SM_b21419 0.57 +1.4 1,349,552 - SM_b21419 0.57 -0.1 1,349,597 - SM_b21419 0.62 -0.0 1,349,836 + SM_b21419 0.89 +0.0 1,349,903 + +0.6 1,350,010 - SM_b21684 0.25 +0.1
Or see this region's nucleotide sequence