Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21223 and SM_b21224 overlap by 1 nucleotides SM_b21224 and SM_b21225 overlap by 4 nucleotides SM_b21225 and SM_b21226 are separated by 46 nucleotides
SM_b21223: SM_b21223 - sulfate adenylyltransferase subunit 2, at 786,637 to 787,536
_b21223
SM_b21224: SM_b21224 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 787,536 to 789,437
_b21224
SM_b21225: SM_b21225 - inositol monophosphatase, at 789,434 to 790,273
_b21225
SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060
_b21226
Position (kb) 787
788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.220 kb on + strand, within SM_b21224 at 789.273 kb on + strand at 789.316 kb on + strand at 789.356 kb on + strand at 789.356 kb on + strand at 789.357 kb on - strand at 789.357 kb on - strand at 789.358 kb on + strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.500 kb on + strand at 789.500 kb on + strand at 789.809 kb on + strand, within SM_b21225 at 789.810 kb on - strand, within SM_b21225 at 789.984 kb on - strand, within SM_b21225 at 790.043 kb on + strand, within SM_b21225 at 790.044 kb on - strand, within SM_b21225 at 790.259 kb on + strand at 790.260 kb on - strand at 790.339 kb on + strand at 790.339 kb on + strand at 790.340 kb on - strand at 790.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 788,490 - SM_b21224 0.50 -2.3 788,490 - SM_b21224 0.50 +0.4 788,490 - SM_b21224 0.50 +2.0 788,490 - SM_b21224 0.50 +0.2 789,010 - SM_b21224 0.77 +1.1 789,010 - SM_b21224 0.77 -0.6 789,220 + SM_b21224 0.89 +0.6 789,273 + -0.2 789,316 + -0.2 789,356 + +0.1 789,356 + -0.7 789,357 - +0.6 789,357 - +0.3 789,358 + -0.3 789,359 - -1.5 789,359 - +0.1 789,359 - +0.4 789,359 - +0.4 789,500 + -1.5 789,500 + -0.4 789,809 + SM_b21225 0.45 -0.7 789,810 - SM_b21225 0.45 -0.3 789,984 - SM_b21225 0.65 +0.4 790,043 + SM_b21225 0.72 +0.0 790,044 - SM_b21225 0.73 +2.5 790,259 + -1.0 790,260 - -0.6 790,339 + -0.3 790,339 + +0.6 790,340 - +0.5 790,340 - +0.8
Or see this region's nucleotide sequence