Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21200 and SM_b21201 overlap by 4 nucleotides SM_b21201 and SM_b21202 are separated by 272 nucleotides
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680
_b21201
SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885
_b21202
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200 at 951.359 kb on + strand, within SM_b21200 at 951.360 kb on - strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.729 kb on - strand at 951.729 kb on - strand at 951.770 kb on + strand at 951.770 kb on + strand at 951.771 kb on - strand at 951.771 kb on - strand at 951.978 kb on + strand at 952.001 kb on + strand at 952.001 kb on + strand at 952.002 kb on - strand at 952.029 kb on + strand at 952.246 kb on - strand, within SM_b21201 at 952.480 kb on - strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.751 kb on - strand, within SM_b21201 at 952.751 kb on - strand at 952.874 kb on - strand, within SM_b21201 at 952.874 kb on - strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.893 kb on + strand, within SM_b21201 at 952.923 kb on - strand, within SM_b21201 at 952.987 kb on - strand, within SM_b21201 at 953.046 kb on + strand, within SM_b21201 at 953.047 kb on - strand, within SM_b21201 at 953.110 kb on - strand, within SM_b21201 at 953.209 kb on - strand, within SM_b21201 at 953.209 kb on - strand, within SM_b21201 at 953.211 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.331 kb on + strand, within SM_b21201 at 953.331 kb on + strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.373 kb on + strand, within SM_b21201 at 953.373 kb on + strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.588 kb on - strand at 953.588 kb on - strand at 953.590 kb on - strand at 953.590 kb on - strand at 953.590 kb on - strand at 953.674 kb on - strand at 953.750 kb on + strand at 953.751 kb on + strand at 953.752 kb on - strand at 953.984 kb on + strand at 953.985 kb on - strand at 954.088 kb on + strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.139 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.434 kb on + strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.478 kb on + strand, within SM_b21202
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 950,954 - SM_b21200 0.32 -2.5 950,985 + SM_b21200 0.35 +0.3 950,985 + SM_b21200 0.35 +1.0 950,985 + SM_b21200 0.35 +0.7 951,040 - SM_b21200 0.39 -0.6 951,359 + SM_b21200 0.62 +0.1 951,360 - SM_b21200 0.62 -2.6 951,568 + SM_b21200 0.78 +0.5 951,568 + SM_b21200 0.78 +0.3 951,729 - +0.1 951,729 - +1.1 951,770 + -1.1 951,770 + +0.5 951,771 - -0.6 951,771 - -1.1 951,978 + -0.8 952,001 + -1.0 952,001 + +0.2 952,002 - -0.6 952,029 + -1.9 952,246 - SM_b21201 0.21 -0.4 952,480 - SM_b21201 0.34 -0.3 952,750 + SM_b21201 0.49 -1.2 952,750 + SM_b21201 0.49 -0.2 952,751 - SM_b21201 0.49 -0.0 952,751 - +0.1 952,874 - SM_b21201 0.56 +0.4 952,874 - SM_b21201 0.56 -0.3 952,875 + SM_b21201 0.56 -0.1 952,875 + SM_b21201 0.56 +0.4 952,875 + SM_b21201 0.56 +0.4 952,893 + SM_b21201 0.57 -0.8 952,923 - SM_b21201 0.58 +0.3 952,987 - SM_b21201 0.62 +0.4 953,046 + SM_b21201 0.65 -0.5 953,047 - SM_b21201 0.65 -1.0 953,110 - SM_b21201 0.69 +1.1 953,209 - SM_b21201 0.74 -0.7 953,209 - SM_b21201 0.74 +0.4 953,211 + SM_b21201 0.74 -0.5 953,244 + SM_b21201 0.76 +1.0 953,244 + SM_b21201 0.76 -0.3 953,244 + SM_b21201 0.76 +1.5 953,244 + SM_b21201 0.76 -0.9 953,245 - SM_b21201 0.76 +0.4 953,245 - SM_b21201 0.76 -2.0 953,245 - SM_b21201 0.76 -0.2 953,331 + SM_b21201 0.81 +0.4 953,331 + SM_b21201 0.81 +0.2 953,332 - SM_b21201 0.81 -0.3 953,332 - SM_b21201 0.81 -0.2 953,332 - SM_b21201 0.81 -0.1 953,373 + SM_b21201 0.83 +1.7 953,373 + SM_b21201 0.83 +0.9 953,374 - SM_b21201 0.83 -1.3 953,374 - SM_b21201 0.83 +8.7 953,374 - SM_b21201 0.83 -0.5 953,374 - SM_b21201 0.83 -0.7 953,374 - SM_b21201 0.83 -0.1 953,374 - SM_b21201 0.83 +1.5 953,374 - SM_b21201 0.83 -1.0 953,587 + -0.3 953,587 + -0.3 953,587 + +0.0 953,587 + +1.0 953,587 + -0.4 953,588 - -0.1 953,588 - -2.3 953,590 - -0.5 953,590 - +0.1 953,590 - -0.4 953,674 - -1.3 953,750 + +1.1 953,751 + -0.2 953,752 - +0.2 953,984 + +1.1 953,985 - +0.0 954,088 + SM_b21202 0.14 -0.2 954,089 - SM_b21202 0.15 +1.1 954,089 - SM_b21202 0.15 -0.2 954,089 - SM_b21202 0.15 +1.0 954,089 - SM_b21202 0.15 +0.0 954,097 + SM_b21202 0.15 -1.2 954,097 + SM_b21202 0.15 -1.1 954,097 + SM_b21202 0.15 -1.3 954,098 - SM_b21202 0.16 +0.3 954,098 - SM_b21202 0.16 -0.9 954,098 - SM_b21202 0.16 -0.3 954,100 + SM_b21202 0.16 +0.6 954,100 + SM_b21202 0.16 +0.1 954,101 - SM_b21202 0.16 +0.2 954,101 - SM_b21202 0.16 -0.3 954,139 + SM_b21202 0.20 -0.4 954,428 + SM_b21202 0.51 +0.1 954,428 + SM_b21202 0.51 -1.9 954,434 + SM_b21202 0.52 +0.4 954,435 - SM_b21202 0.52 +0.9 954,435 - SM_b21202 0.52 -0.8 954,478 + SM_b21202 0.56 +0.5
Or see this region's nucleotide sequence