Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21661 and SM_b21711 overlap by 28 nucleotides SM_b21711 and SM_b21045 are separated by 511 nucleotides SM_b21045 and SM_b21046 are separated by 95 nucleotides
SM_b21661: SM_b21661 - transposase of insertion sequence ISRm10-1, orfA protein, at 674,574 to 674,957
_b21661
SM_b21711: SM_b21711 - transposase of insertion sequence ISRm10-1, orfB N-terminus protein, at 674,930 to 675,061
_b21711
SM_b21045: SM_b21045 - reverse transcriptasematurase, at 675,573 to 676,832
_b21045
SM_b21046: SM_b21046 - transposase of insertion sequence ISRm10-1, orfB C-terminus protein, at 676,928 to 677,401
_b21046
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.090 kb on + strand, within SM_b21046 at 677.137 kb on - strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.209 kb on + strand, within SM_b21046 at 677.210 kb on - strand, within SM_b21046 at 677.228 kb on - strand, within SM_b21046 at 677.369 kb on + strand at 677.369 kb on + strand at 677.369 kb on + strand at 677.369 kb on + strand at 677.387 kb on + strand at 677.415 kb on + strand at 677.416 kb on - strand at 677.416 kb on - strand at 677.416 kb on - strand at 677.516 kb on + strand at 677.516 kb on + strand at 677.526 kb on + strand at 677.566 kb on + strand at 677.573 kb on + strand at 677.596 kb on + strand at 677.596 kb on + strand at 677.597 kb on - strand at 677.597 kb on - strand at 677.597 kb on - strand at 677.721 kb on + strand at 677.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 677,090 + SM_b21046 0.34 +2.7 677,137 - SM_b21046 0.44 -0.4 677,209 + SM_b21046 0.59 -0.6 677,209 + SM_b21046 0.59 -2.0 677,209 + SM_b21046 0.59 +0.1 677,209 + SM_b21046 0.59 -0.4 677,210 - SM_b21046 0.59 -0.2 677,228 - SM_b21046 0.63 -0.8 677,369 + -0.4 677,369 + -0.1 677,369 + -1.0 677,369 + +0.5 677,387 + +0.1 677,415 + +0.1 677,416 - -1.9 677,416 - -0.1 677,416 - +0.4 677,516 + -2.4 677,516 + +0.1 677,526 + -0.9 677,566 + -0.3 677,573 + +0.4 677,596 + +0.2 677,596 + -1.4 677,597 - +0.5 677,597 - -0.3 677,597 - +0.0 677,721 + +0.4 677,722 - -0.0
Or see this region's nucleotide sequence