Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20975 and SM_b20976 are separated by 73 nucleotides SM_b20976 and SM_b20977 are separated by 30 nucleotides SM_b20977 and SM_b20978 are separated by 234 nucleotides SM_b20978 and SM_b20979 are separated by 87 nucleotides
SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801
_b20975
SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621
_b20976
SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719
_b20977
SM_b20978: SM_b20978 - hypothetical protein, at 1,210,954 to 1,211,505
_b20978
SM_b20979: SM_b20979 - large C4-dicarboxylate uptake permease, DedA family protein, at 1,211,593 to 1,212,906
_b20979
Position (kb)
1209
1210
1211 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1208.734 kb on + strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.876 kb on + strand at 1208.876 kb on + strand at 1208.877 kb on - strand at 1209.137 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.293 kb on + strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.461 kb on - strand, within SM_b20976 at 1209.538 kb on - strand, within SM_b20976 at 1209.667 kb on + strand at 1209.806 kb on + strand, within SM_b20977 at 1209.806 kb on + strand, within SM_b20977 at 1209.807 kb on - strand, within SM_b20977 at 1209.833 kb on + strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1210.011 kb on + strand, within SM_b20977 at 1210.313 kb on - strand, within SM_b20977 at 1210.403 kb on + strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.451 kb on + strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.473 kb on - strand, within SM_b20977 at 1210.656 kb on - strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.807 kb on - strand at 1210.807 kb on - strand at 1210.807 kb on - strand at 1210.808 kb on + strand at 1210.823 kb on + strand at 1210.956 kb on - strand at 1210.956 kb on - strand at 1211.021 kb on + strand, within SM_b20978 at 1211.057 kb on + strand, within SM_b20978 at 1211.057 kb on + strand, within SM_b20978 at 1211.088 kb on - strand, within SM_b20978 at 1211.171 kb on + strand, within SM_b20978 at 1211.172 kb on - strand, within SM_b20978 at 1211.177 kb on + strand, within SM_b20978 at 1211.203 kb on - strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.301 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.341 kb on - strand, within SM_b20978 at 1211.401 kb on + strand, within SM_b20978 at 1211.513 kb on - strand at 1211.535 kb on + strand at 1211.581 kb on + strand at 1211.582 kb on - strand at 1211.582 kb on - strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.693 kb on + strand at 1211.693 kb on + strand at 1211.694 kb on - strand at 1211.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,208,734 + +1.2 1,208,735 - +0.5 1,208,735 - -2.0 1,208,735 - -0.2 1,208,876 + +0.1 1,208,876 + -1.2 1,208,877 - -0.3 1,209,137 + SM_b20976 0.35 +0.2 1,209,271 + SM_b20976 0.53 -0.9 1,209,271 + SM_b20976 0.53 +0.9 1,209,293 + SM_b20976 0.56 +0.7 1,209,294 - SM_b20976 0.56 +1.0 1,209,294 - SM_b20976 0.56 -0.8 1,209,294 - SM_b20976 0.56 -0.0 1,209,461 - SM_b20976 0.78 -2.1 1,209,538 - SM_b20976 0.89 -0.3 1,209,667 + -0.9 1,209,806 + SM_b20977 0.14 -0.3 1,209,806 + SM_b20977 0.14 +0.7 1,209,807 - SM_b20977 0.15 +0.5 1,209,833 + SM_b20977 0.17 -1.1 1,209,834 - SM_b20977 0.17 -1.4 1,209,834 - SM_b20977 0.17 +0.0 1,210,011 + SM_b20977 0.34 -1.0 1,210,313 - SM_b20977 0.62 -0.4 1,210,403 + SM_b20977 0.70 -0.0 1,210,450 - SM_b20977 0.75 +0.2 1,210,450 - SM_b20977 0.75 -0.9 1,210,450 - SM_b20977 0.75 +3.1 1,210,451 + SM_b20977 0.75 -0.7 1,210,452 - SM_b20977 0.75 -1.0 1,210,452 - SM_b20977 0.75 +0.2 1,210,472 + SM_b20977 0.77 -1.1 1,210,472 + SM_b20977 0.77 +0.2 1,210,472 + SM_b20977 0.77 -0.4 1,210,472 + SM_b20977 0.77 -0.8 1,210,472 + SM_b20977 0.77 +0.2 1,210,472 + SM_b20977 0.77 -0.1 1,210,473 - SM_b20977 0.77 +0.0 1,210,656 - +1.0 1,210,806 + +0.5 1,210,806 + -2.4 1,210,806 + -1.1 1,210,806 + -1.3 1,210,807 - +1.8 1,210,807 - +1.4 1,210,807 - +0.5 1,210,808 + -0.6 1,210,823 + +0.5 1,210,956 - -0.3 1,210,956 - -0.2 1,211,021 + SM_b20978 0.12 -0.1 1,211,057 + SM_b20978 0.19 -0.6 1,211,057 + SM_b20978 0.19 -0.0 1,211,088 - SM_b20978 0.24 -1.6 1,211,171 + SM_b20978 0.39 -1.3 1,211,172 - SM_b20978 0.39 -0.3 1,211,177 + SM_b20978 0.40 +1.1 1,211,203 - SM_b20978 0.45 -0.9 1,211,300 + SM_b20978 0.63 +0.9 1,211,300 + SM_b20978 0.63 -0.9 1,211,300 + SM_b20978 0.63 -0.9 1,211,300 + SM_b20978 0.63 -0.3 1,211,300 + SM_b20978 0.63 +0.4 1,211,300 + SM_b20978 0.63 -0.9 1,211,300 + SM_b20978 0.63 -1.1 1,211,300 + SM_b20978 0.63 -1.2 1,211,301 - SM_b20978 0.63 +1.0 1,211,326 - SM_b20978 0.67 -0.4 1,211,326 - SM_b20978 0.67 +0.3 1,211,326 - SM_b20978 0.67 -2.2 1,211,341 - SM_b20978 0.70 -0.6 1,211,401 + SM_b20978 0.81 +0.3 1,211,513 - -0.8 1,211,535 + -0.8 1,211,581 + +0.3 1,211,582 - +0.3 1,211,582 - +0.7 1,211,615 + -1.2 1,211,615 + -0.7 1,211,615 + +0.8 1,211,615 + +0.7 1,211,693 + +0.5 1,211,693 + -0.2 1,211,694 - +0.3 1,211,714 + -1.4
Or see this region's nucleotide sequence