Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20975 and SM_b20976 are separated by 73 nucleotides SM_b20976 and SM_b20977 are separated by 30 nucleotides
SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801
_b20975
SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621
_b20976
SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719
_b20977
Position (kb)
1208
1209
1210 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1208.020 kb on + strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.164 kb on + strand, within SM_b20975 at 1208.432 kb on + strand, within SM_b20975 at 1208.433 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.734 kb on + strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.876 kb on + strand at 1208.876 kb on + strand at 1208.877 kb on - strand at 1209.137 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.293 kb on + strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.461 kb on - strand, within SM_b20976 at 1209.538 kb on - strand, within SM_b20976 at 1209.667 kb on + strand at 1209.806 kb on + strand, within SM_b20977 at 1209.806 kb on + strand, within SM_b20977 at 1209.807 kb on - strand, within SM_b20977 at 1209.833 kb on + strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1210.011 kb on + strand, within SM_b20977 at 1210.313 kb on - strand, within SM_b20977 at 1210.403 kb on + strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.451 kb on + strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.473 kb on - strand, within SM_b20977
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,207,957 - SM_b20975 0.49 +0.5 1,207,957 - SM_b20975 0.49 +1.1 1,207,957 - SM_b20975 0.49 -1.4 1,208,020 + SM_b20975 0.53 +0.6 1,208,021 - SM_b20975 0.53 +0.2 1,208,021 - SM_b20975 0.53 +0.5 1,208,111 - SM_b20975 0.58 -0.4 1,208,111 - SM_b20975 0.58 +0.8 1,208,164 + SM_b20975 0.61 +0.0 1,208,432 + SM_b20975 0.78 +1.1 1,208,433 - SM_b20975 0.78 +0.0 1,208,498 - SM_b20975 0.82 +1.0 1,208,498 - SM_b20975 0.82 -0.1 1,208,734 + +1.2 1,208,735 - +0.5 1,208,735 - -2.0 1,208,735 - -0.2 1,208,876 + +0.1 1,208,876 + -1.2 1,208,877 - -0.3 1,209,137 + SM_b20976 0.35 +0.2 1,209,271 + SM_b20976 0.53 -0.9 1,209,271 + SM_b20976 0.53 +0.9 1,209,293 + SM_b20976 0.56 +0.7 1,209,294 - SM_b20976 0.56 +1.0 1,209,294 - SM_b20976 0.56 -0.8 1,209,294 - SM_b20976 0.56 -0.0 1,209,461 - SM_b20976 0.78 -2.1 1,209,538 - SM_b20976 0.89 -0.3 1,209,667 + -0.9 1,209,806 + SM_b20977 0.14 -0.3 1,209,806 + SM_b20977 0.14 +0.7 1,209,807 - SM_b20977 0.15 +0.5 1,209,833 + SM_b20977 0.17 -1.1 1,209,834 - SM_b20977 0.17 -1.4 1,209,834 - SM_b20977 0.17 +0.0 1,210,011 + SM_b20977 0.34 -1.0 1,210,313 - SM_b20977 0.62 -0.4 1,210,403 + SM_b20977 0.70 -0.0 1,210,450 - SM_b20977 0.75 +0.2 1,210,450 - SM_b20977 0.75 -0.9 1,210,450 - SM_b20977 0.75 +3.1 1,210,451 + SM_b20977 0.75 -0.7 1,210,452 - SM_b20977 0.75 -1.0 1,210,452 - SM_b20977 0.75 +0.2 1,210,472 + SM_b20977 0.77 -1.1 1,210,472 + SM_b20977 0.77 +0.2 1,210,472 + SM_b20977 0.77 -0.4 1,210,472 + SM_b20977 0.77 -0.8 1,210,472 + SM_b20977 0.77 +0.2 1,210,472 + SM_b20977 0.77 -0.1 1,210,473 - SM_b20977 0.77 +0.0
Or see this region's nucleotide sequence