Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20964

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20962 and SM_b20963 are separated by 34 nucleotidesSM_b20963 and SM_b20964 are separated by 104 nucleotidesSM_b20964 and SM_b20965 are separated by 117 nucleotides SM_b20962: SM_b20962 - phoshomethylpyrimidine kinase, at 1,191,117 to 1,191,917 _b20962 SM_b20963: SM_b20963 - transcriptional regulator, at 1,191,952 to 1,192,257 _b20963 SM_b20964: SM_b20964 - Ahp/CTSA family anti-oxidant protein, at 1,192,362 to 1,193,021 _b20964 SM_b20965: SM_b20965 - exported enzyme, 6-aminohexanoate-dimer hydrolase, at 1,193,139 to 1,194,137 _b20965 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -1 0 1 2 3 4at 1191.962 kb on + strandat 1191.962 kb on + strandat 1191.963 kb on - strandat 1192.150 kb on - strand, within SM_b20963at 1192.153 kb on + strand, within SM_b20963at 1192.154 kb on - strand, within SM_b20963at 1192.163 kb on + strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.201 kb on - strand, within SM_b20963at 1192.232 kb on + strandat 1192.233 kb on - strandat 1192.254 kb on - strandat 1192.254 kb on - strandat 1192.254 kb on - strandat 1192.561 kb on + strand, within SM_b20964at 1192.562 kb on - strand, within SM_b20964at 1192.562 kb on - strand, within SM_b20964at 1192.761 kb on + strand, within SM_b20964at 1192.762 kb on - strand, within SM_b20964at 1192.762 kb on - strand, within SM_b20964at 1192.837 kb on + strand, within SM_b20964at 1193.097 kb on + strandat 1193.097 kb on + strandat 1193.100 kb on + strandat 1193.110 kb on + strandat 1193.265 kb on + strand, within SM_b20965at 1193.265 kb on + strand, within SM_b20965at 1193.266 kb on - strand, within SM_b20965at 1193.266 kb on - strand, within SM_b20965at 1193.269 kb on + strand, within SM_b20965at 1193.269 kb on + strand, within SM_b20965at 1193.269 kb on + strand, within SM_b20965at 1193.269 kb on + strand, within SM_b20965at 1193.270 kb on - strand, within SM_b20965at 1193.287 kb on + strand, within SM_b20965at 1193.288 kb on - strand, within SM_b20965at 1193.288 kb on - strand, within SM_b20965at 1193.299 kb on + strand, within SM_b20965at 1193.299 kb on + strand, within SM_b20965at 1193.300 kb on - strand, within SM_b20965at 1193.302 kb on + strand, within SM_b20965at 1193.303 kb on - strand, within SM_b20965at 1193.303 kb on - strand, within SM_b20965at 1193.342 kb on - strand, within SM_b20965at 1193.347 kb on + strand, within SM_b20965at 1193.360 kb on + strand, within SM_b20965at 1193.453 kb on - strand, within SM_b20965at 1193.512 kb on + strand, within SM_b20965at 1193.513 kb on - strand, within SM_b20965at 1193.513 kb on - strand, within SM_b20965at 1193.513 kb on - strand, within SM_b20965at 1193.513 kb on - strand, within SM_b20965at 1193.513 kb on - strand, within SM_b20965at 1193.653 kb on + strand, within SM_b20965at 1193.653 kb on + strand, within SM_b20965at 1193.653 kb on + strand, within SM_b20965at 1193.721 kb on - strand, within SM_b20965

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,191,962 + +0.6
1,191,962 + +2.0
1,191,963 - -0.2
1,192,150 - SM_b20963 0.65 -0.1
1,192,153 + SM_b20963 0.66 -0.3
1,192,154 - SM_b20963 0.66 -0.6
1,192,163 + SM_b20963 0.69 +1.8
1,192,201 - SM_b20963 0.81 -0.2
1,192,201 - SM_b20963 0.81 +0.7
1,192,201 - SM_b20963 0.81 +1.2
1,192,232 + -0.1
1,192,233 - +0.6
1,192,254 - -1.2
1,192,254 - +0.0
1,192,254 - -1.4
1,192,561 + SM_b20964 0.30 +3.9
1,192,562 - SM_b20964 0.30 +0.2
1,192,562 - SM_b20964 0.30 -0.1
1,192,761 + SM_b20964 0.60 -0.2
1,192,762 - SM_b20964 0.61 -0.4
1,192,762 - SM_b20964 0.61 +0.7
1,192,837 + SM_b20964 0.72 -0.4
1,193,097 + +0.1
1,193,097 + +0.1
1,193,100 + +2.0
1,193,110 + +0.7
1,193,265 + SM_b20965 0.13 -0.0
1,193,265 + SM_b20965 0.13 -0.4
1,193,266 - SM_b20965 0.13 -0.8
1,193,266 - SM_b20965 0.13 -1.1
1,193,269 + SM_b20965 0.13 -0.6
1,193,269 + SM_b20965 0.13 -0.1
1,193,269 + SM_b20965 0.13 -0.4
1,193,269 + SM_b20965 0.13 -0.5
1,193,270 - SM_b20965 0.13 -1.6
1,193,287 + SM_b20965 0.15 -0.0
1,193,288 - SM_b20965 0.15 -0.0
1,193,288 - SM_b20965 0.15 -1.6
1,193,299 + SM_b20965 0.16 -0.9
1,193,299 + SM_b20965 0.16 -0.2
1,193,300 - SM_b20965 0.16 -0.4
1,193,302 + SM_b20965 0.16 +0.6
1,193,303 - SM_b20965 0.16 +0.5
1,193,303 - SM_b20965 0.16 +1.0
1,193,342 - SM_b20965 0.20 -0.9
1,193,347 + SM_b20965 0.21 -1.2
1,193,360 + SM_b20965 0.22 -0.0
1,193,453 - SM_b20965 0.31 -0.7
1,193,512 + SM_b20965 0.37 -0.6
1,193,513 - SM_b20965 0.37 -0.1
1,193,513 - SM_b20965 0.37 +0.4
1,193,513 - SM_b20965 0.37 +0.2
1,193,513 - SM_b20965 0.37 +0.8
1,193,513 - SM_b20965 0.37 +0.2
1,193,653 + SM_b20965 0.51 +0.9
1,193,653 + SM_b20965 0.51 -0.3
1,193,653 + SM_b20965 0.51 -0.8
1,193,721 - SM_b20965 0.58 -0.5

Or see this region's nucleotide sequence