Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20884

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20882 and SM_b20883 are separated by 183 nucleotidesSM_b20883 and SM_b20884 are separated by 42 nucleotidesSM_b20884 and SM_b20885 are separated by 48 nucleotides SM_b20882: SM_b20882 - hypothetical protein, at 1,288,541 to 1,288,990 _b20882 SM_b20883: SM_b20883 - hypothetical protein, at 1,289,174 to 1,289,641 _b20883 SM_b20884: SM_b20884 - hypothetical protein, at 1,289,684 to 1,290,118 _b20884 SM_b20885: SM_b20885 - hypothetical protein, at 1,290,167 to 1,291,087 _b20885 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1 2at 1288.841 kb on + strand, within SM_b20882at 1289.015 kb on + strandat 1289.016 kb on - strandat 1289.018 kb on + strandat 1289.019 kb on - strandat 1289.019 kb on - strandat 1289.112 kb on + strandat 1289.113 kb on - strandat 1289.113 kb on - strandat 1289.113 kb on - strandat 1289.116 kb on + strandat 1289.117 kb on - strandat 1289.117 kb on - strandat 1289.261 kb on + strand, within SM_b20883at 1289.557 kb on + strand, within SM_b20883at 1289.557 kb on + strand, within SM_b20883at 1290.058 kb on + strand, within SM_b20884at 1290.059 kb on - strand, within SM_b20884at 1290.158 kb on + strandat 1290.158 kb on + strandat 1290.158 kb on + strandat 1290.237 kb on + strandat 1290.237 kb on + strandat 1290.237 kb on + strandat 1290.238 kb on - strandat 1290.238 kb on - strandat 1290.257 kb on + strandat 1290.257 kb on + strandat 1290.258 kb on - strandat 1290.340 kb on - strand, within SM_b20885at 1290.340 kb on - strand, within SM_b20885at 1290.384 kb on + strand, within SM_b20885at 1290.384 kb on + strand, within SM_b20885at 1290.385 kb on - strand, within SM_b20885at 1290.385 kb on - strand, within SM_b20885at 1290.454 kb on + strand, within SM_b20885at 1290.522 kb on + strand, within SM_b20885at 1290.522 kb on + strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.564 kb on + strand, within SM_b20885at 1290.588 kb on + strand, within SM_b20885at 1290.712 kb on + strand, within SM_b20885at 1290.846 kb on - strand, within SM_b20885at 1290.858 kb on + strandat 1290.858 kb on + strand, within SM_b20885at 1290.859 kb on - strand, within SM_b20885at 1290.859 kb on - strand, within SM_b20885at 1290.976 kb on - strand, within SM_b20885at 1290.976 kb on - strand, within SM_b20885at 1291.020 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,288,841 + SM_b20882 0.67 -2.4
1,289,015 + +0.5
1,289,016 - -2.4
1,289,018 + -0.8
1,289,019 - -0.0
1,289,019 - +0.3
1,289,112 + +0.2
1,289,113 - -2.3
1,289,113 - -1.1
1,289,113 - +0.8
1,289,116 + +0.2
1,289,117 - +1.2
1,289,117 - +0.3
1,289,261 + SM_b20883 0.19 +0.1
1,289,557 + SM_b20883 0.82 -0.8
1,289,557 + SM_b20883 0.82 -1.4
1,290,058 + SM_b20884 0.86 -0.2
1,290,059 - SM_b20884 0.86 +1.5
1,290,158 + -0.4
1,290,158 + -1.0
1,290,158 + +0.1
1,290,237 + -0.8
1,290,237 + -0.8
1,290,237 + -0.2
1,290,238 - -0.1
1,290,238 - -0.7
1,290,257 + -0.3
1,290,257 + +0.8
1,290,258 - -0.9
1,290,340 - SM_b20885 0.19 -0.6
1,290,340 - SM_b20885 0.19 -0.1
1,290,384 + SM_b20885 0.24 +0.2
1,290,384 + SM_b20885 0.24 +0.8
1,290,385 - SM_b20885 0.24 -1.4
1,290,385 - SM_b20885 0.24 -0.8
1,290,454 + SM_b20885 0.31 +1.1
1,290,522 + SM_b20885 0.39 -0.2
1,290,522 + SM_b20885 0.39 -0.3
1,290,523 - SM_b20885 0.39 +0.4
1,290,523 - SM_b20885 0.39 +1.8
1,290,523 - SM_b20885 0.39 -0.0
1,290,523 - SM_b20885 0.39 +1.4
1,290,523 - SM_b20885 0.39 -0.5
1,290,523 - SM_b20885 0.39 +1.0
1,290,564 + SM_b20885 0.43 -0.0
1,290,588 + SM_b20885 0.46 -0.8
1,290,712 + SM_b20885 0.59 -0.4
1,290,846 - SM_b20885 0.74 +0.3
1,290,858 + +0.8
1,290,858 + SM_b20885 0.75 +0.7
1,290,859 - SM_b20885 0.75 +0.0
1,290,859 - SM_b20885 0.75 +0.6
1,290,976 - SM_b20885 0.88 +0.1
1,290,976 - SM_b20885 0.88 -1.4
1,291,020 + -0.5

Or see this region's nucleotide sequence