Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20612

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20611 and SM_b20612 are separated by 231 nucleotidesSM_b20612 and SM_b20613 are separated by 3 nucleotides SM_b20611: SM_b20611 - C4-dicarboxylate transporter DctA, at 1,626,577 to 1,627,902 _b20611 SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999 _b20612 SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385 _b20613 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1627.142 kb on + strand, within SM_b20611at 1627.142 kb on + strand, within SM_b20611at 1627.194 kb on - strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.515 kb on - strand, within SM_b20611at 1627.555 kb on - strand, within SM_b20611at 1627.634 kb on + strand, within SM_b20611at 1627.635 kb on - strand, within SM_b20611at 1627.793 kb on + strandat 1627.844 kb on + strandat 1627.845 kb on - strandat 1627.845 kb on - strandat 1627.856 kb on + strandat 1627.906 kb on - strandat 1628.261 kb on + strandat 1628.578 kb on + strand, within SM_b20612at 1628.579 kb on - strand, within SM_b20612at 1628.670 kb on + strand, within SM_b20612at 1628.671 kb on - strand, within SM_b20612at 1628.671 kb on - strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.777 kb on - strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.161 kb on + strand, within SM_b20612at 1629.162 kb on - strand, within SM_b20612at 1629.162 kb on - strand, within SM_b20612at 1629.165 kb on - strand, within SM_b20612at 1629.165 kb on - strand, within SM_b20612at 1629.413 kb on - strand, within SM_b20612at 1629.421 kb on - strand, within SM_b20612at 1629.928 kb on + strandat 1629.929 kb on - strandat 1630.249 kb on - strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.300 kb on + strand, within SM_b20613at 1630.301 kb on - strand, within SM_b20613at 1630.301 kb on - strand, within SM_b20613at 1630.909 kb on + strand, within SM_b20613at 1630.909 kb on + strand, within SM_b20613at 1630.910 kb on - strand, within SM_b20613at 1630.912 kb on + strand, within SM_b20613

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,627,142 + SM_b20611 0.43 +0.8
1,627,142 + SM_b20611 0.43 -0.1
1,627,194 - SM_b20611 0.47 +1.3
1,627,241 + SM_b20611 0.50 +1.4
1,627,241 + SM_b20611 0.50 +0.1
1,627,242 - SM_b20611 0.50 +1.2
1,627,242 - SM_b20611 0.50 +0.8
1,627,242 - SM_b20611 0.50 +1.3
1,627,242 - SM_b20611 0.50 +0.7
1,627,242 - SM_b20611 0.50 +0.7
1,627,242 - SM_b20611 0.50 +0.9
1,627,515 - SM_b20611 0.71 +0.9
1,627,555 - SM_b20611 0.74 +1.3
1,627,634 + SM_b20611 0.80 +2.0
1,627,635 - SM_b20611 0.80 +1.4
1,627,793 + +0.9
1,627,844 + +0.7
1,627,845 - +0.9
1,627,845 - +1.4
1,627,856 + +0.4
1,627,906 - +1.4
1,628,261 + +0.5
1,628,578 + SM_b20612 0.24 -0.3
1,628,579 - SM_b20612 0.24 +1.6
1,628,670 + SM_b20612 0.29 +0.9
1,628,671 - SM_b20612 0.29 +0.4
1,628,671 - SM_b20612 0.29 +0.3
1,628,776 + SM_b20612 0.34 +0.2
1,628,776 + SM_b20612 0.34 +1.4
1,628,776 + SM_b20612 0.34 +0.8
1,628,777 - SM_b20612 0.34 +0.1
1,629,161 + SM_b20612 0.55 +0.4
1,629,161 + SM_b20612 0.55 +2.6
1,629,161 + SM_b20612 0.55 +1.1
1,629,161 + SM_b20612 0.55 -0.4
1,629,162 - SM_b20612 0.55 -0.8
1,629,162 - SM_b20612 0.55 +1.6
1,629,165 - SM_b20612 0.55 +0.2
1,629,165 - SM_b20612 0.55 +0.7
1,629,413 - SM_b20612 0.69 +0.5
1,629,421 - SM_b20612 0.69 +0.7
1,629,928 + -0.1
1,629,929 - +1.0
1,630,249 - SM_b20613 0.18 +3.1
1,630,300 + SM_b20613 0.21 +5.4
1,630,300 + SM_b20613 0.21 +3.3
1,630,300 + SM_b20613 0.21 +3.3
1,630,301 - SM_b20613 0.22 +4.0
1,630,301 - SM_b20613 0.22 +3.1
1,630,909 + SM_b20613 0.66 +3.3
1,630,909 + SM_b20613 0.66 +3.5
1,630,910 - SM_b20613 0.66 +3.6
1,630,912 + SM_b20613 0.66 +2.3

Or see this region's nucleotide sequence