Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20166

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20164 and SM_b20165 are separated by 106 nucleotidesSM_b20165 and SM_b20166 overlap by 4 nucleotidesSM_b20166 and SM_b20167 are separated by 73 nucleotides SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220 _b20164 SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998 _b20165 SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348 _b20166 SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234 _b20167 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 184.006 kb on - strandat 184.034 kb on - strandat 184.267 kb on + strandat 184.268 kb on - strandat 184.332 kb on + strandat 184.332 kb on + strandat 184.399 kb on + strand, within SM_b20165at 184.484 kb on - strand, within SM_b20165at 184.484 kb on - strand, within SM_b20165at 184.576 kb on + strand, within SM_b20165at 184.577 kb on - strand, within SM_b20165at 184.609 kb on + strand, within SM_b20165at 184.610 kb on - strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.897 kb on + strand, within SM_b20165at 184.900 kb on + strand, within SM_b20165at 184.900 kb on + strand, within SM_b20165at 185.106 kb on + strand, within SM_b20166at 185.106 kb on + strand, within SM_b20166at 185.106 kb on + strand, within SM_b20166at 185.149 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.209 kb on - strand, within SM_b20166at 185.209 kb on - strand, within SM_b20166at 185.346 kb on + strandat 185.472 kb on + strandat 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.663 kb on + strand, within SM_b20167at 185.664 kb on - strand, within SM_b20167at 185.664 kb on - strand, within SM_b20167at 185.711 kb on - strand, within SM_b20167at 186.151 kb on + strand, within SM_b20167at 186.213 kb on + strandat 186.269 kb on - strandat 186.273 kb on + strandat 186.273 kb on + strandat 186.273 kb on + strandat 186.273 kb on + strandat 186.274 kb on - strandat 186.274 kb on - strandat 186.274 kb on - strandat 186.274 kb on - strandat 186.275 kb on + strandat 186.275 kb on + strandat 186.276 kb on - strandat 186.276 kb on - strandat 186.276 kb on - strandat 186.276 kb on - strandat 186.276 kb on - strandat 186.280 kb on + strandat 186.280 kb on + strandat 186.280 kb on + strandat 186.281 kb on - strandat 186.281 kb on - strandat 186.281 kb on - strandat 186.319 kb on + strandat 186.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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184,006 - -0.2
184,034 - -1.2
184,267 + -0.4
184,268 - +1.3
184,332 + +0.6
184,332 + +1.3
184,399 + SM_b20165 0.11 -0.7
184,484 - SM_b20165 0.23 +1.3
184,484 - SM_b20165 0.23 +0.2
184,576 + SM_b20165 0.37 +0.1
184,577 - SM_b20165 0.37 -1.3
184,609 + SM_b20165 0.42 +1.9
184,610 - SM_b20165 0.42 +0.6
184,699 + SM_b20165 0.55 +0.0
184,699 + SM_b20165 0.55 +1.1
184,699 + SM_b20165 0.55 +0.2
184,699 + SM_b20165 0.55 -0.7
184,897 + SM_b20165 0.85 -0.2
184,900 + SM_b20165 0.85 +0.8
184,900 + SM_b20165 0.85 +1.1
185,106 + SM_b20166 0.31 -0.5
185,106 + SM_b20166 0.31 -1.6
185,106 + SM_b20166 0.31 -0.4
185,149 + SM_b20166 0.44 -1.3
185,208 + SM_b20166 0.60 -1.8
185,208 + SM_b20166 0.60 -2.2
185,208 + SM_b20166 0.60 +0.4
185,209 - SM_b20166 0.60 +0.1
185,209 - SM_b20166 0.60 +0.3
185,346 + +0.2
185,472 + -0.3
185,517 - SM_b20167 0.12 +0.1
185,517 - SM_b20167 0.12 -0.3
185,517 - SM_b20167 0.12 -1.1
185,517 - SM_b20167 0.12 -1.2
185,517 - SM_b20167 0.12 -1.1
185,663 + SM_b20167 0.30 +0.4
185,664 - SM_b20167 0.30 -0.2
185,664 - SM_b20167 0.30 +0.4
185,711 - SM_b20167 0.36 +1.2
186,151 + SM_b20167 0.90 -0.3
186,213 + +0.3
186,269 - +0.1
186,273 + -0.0
186,273 + -0.0
186,273 + -1.1
186,273 + +0.8
186,274 - -2.1
186,274 - -0.0
186,274 - -0.7
186,274 - -1.1
186,275 + -1.0
186,275 + +0.9
186,276 - +0.5
186,276 - -0.6
186,276 - -0.1
186,276 - -0.2
186,276 - -0.2
186,280 + +1.8
186,280 + +0.2
186,280 + -0.5
186,281 - -0.3
186,281 - -0.1
186,281 - +0.4
186,319 + +1.0
186,320 - -0.9

Or see this region's nucleotide sequence