Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20112

Experiment: perchlorate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20111 and SM_b20112 overlap by 4 nucleotidesSM_b20112 and SM_b20113 are separated by 36 nucleotidesSM_b20113 and SM_b20114 are separated by 2 nucleotides SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788 _b20111 SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672 _b20112 SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641 _b20113 SM_b20114: SM_b20114 - hypothetical protein, at 125,644 to 126,369 _b20114 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 122.904 kb on + strand, within SM_b20111at 122.905 kb on - strand, within SM_b20111at 122.906 kb on + strand, within SM_b20111at 122.945 kb on + strand, within SM_b20111at 122.945 kb on + strand, within SM_b20111at 122.946 kb on - strand, within SM_b20111at 122.946 kb on - strand, within SM_b20111at 123.015 kb on + strand, within SM_b20111at 123.015 kb on + strand, within SM_b20111at 123.016 kb on - strand, within SM_b20111at 123.016 kb on - strand, within SM_b20111at 123.018 kb on - strand, within SM_b20111at 123.277 kb on - strand, within SM_b20111at 123.278 kb on + strand, within SM_b20111at 123.278 kb on + strand, within SM_b20111at 123.278 kb on + strand, within SM_b20111at 123.279 kb on - strand, within SM_b20111at 123.279 kb on - strand, within SM_b20111at 123.279 kb on - strand, within SM_b20111at 123.597 kb on + strand, within SM_b20111at 123.607 kb on + strand, within SM_b20111at 123.723 kb on + strandat 123.725 kb on + strandat 123.725 kb on + strandat 123.726 kb on - strandat 123.726 kb on - strandat 123.726 kb on - strandat 123.947 kb on + strand, within SM_b20112at 123.947 kb on + strand, within SM_b20112at 123.948 kb on - strand, within SM_b20112at 124.086 kb on + strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.477 kb on - strand, within SM_b20112at 124.671 kb on - strandat 124.960 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.171 kb on - strand, within SM_b20113at 125.412 kb on + strand, within SM_b20113at 125.465 kb on - strand, within SM_b20113at 125.558 kb on - strandat 125.646 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
remove
122,904 + SM_b20111 0.46 -0.6
122,905 - SM_b20111 0.46 -0.3
122,906 + SM_b20111 0.46 -0.3
122,945 + SM_b20111 0.49 -0.7
122,945 + SM_b20111 0.49 -0.3
122,946 - SM_b20111 0.49 -0.5
122,946 - SM_b20111 0.49 -0.1
123,015 + SM_b20111 0.53 -0.5
123,015 + SM_b20111 0.53 -0.7
123,016 - SM_b20111 0.53 +0.0
123,016 - SM_b20111 0.53 +0.2
123,018 - SM_b20111 0.53 -0.7
123,277 - SM_b20111 0.69 -0.9
123,278 + SM_b20111 0.69 -0.2
123,278 + SM_b20111 0.69 -1.4
123,278 + SM_b20111 0.69 -0.2
123,279 - SM_b20111 0.69 -1.5
123,279 - SM_b20111 0.69 -0.6
123,279 - SM_b20111 0.69 +1.4
123,597 + SM_b20111 0.88 -0.2
123,607 + SM_b20111 0.89 +0.2
123,723 + +1.3
123,725 + -0.4
123,725 + -0.1
123,726 - +0.6
123,726 - -1.2
123,726 - +1.0
123,947 + SM_b20112 0.18 +0.9
123,947 + SM_b20112 0.18 +0.6
123,948 - SM_b20112 0.18 -0.1
124,086 + SM_b20112 0.34 -2.0
124,477 - SM_b20112 0.78 -1.3
124,477 - SM_b20112 0.78 -0.6
124,477 - SM_b20112 0.78 -2.0
124,671 - +3.5
124,960 - SM_b20113 0.27 -0.2
125,171 - SM_b20113 0.50 -0.8
125,171 - SM_b20113 0.50 -0.5
125,171 - SM_b20113 0.50 -0.3
125,412 + SM_b20113 0.75 +0.3
125,465 - SM_b20113 0.81 -0.7
125,558 - +0.8
125,646 - +0.8

Or see this region's nucleotide sequence