Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20084 and SM_b20085 are separated by 51 nucleotides SM_b20085 and SM_b20086 are separated by 197 nucleotides SM_b20086 and SM_b20087 are separated by 22 nucleotides SM_b20087 and SM_b20088 are separated by 154 nucleotides
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand at 95.268 kb on + strand at 95.269 kb on - strand at 95.694 kb on - strand, within SM_b20086 at 95.694 kb on - strand, within SM_b20086 at 95.716 kb on - strand, within SM_b20086 at 95.762 kb on - strand at 95.828 kb on - strand at 95.887 kb on - strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.942 kb on + strand, within SM_b20087 at 95.943 kb on - strand, within SM_b20087 at 96.029 kb on + strand, within SM_b20087 at 96.030 kb on - strand, within SM_b20087 at 96.281 kb on + strand, within SM_b20087 at 96.282 kb on - strand, within SM_b20087 at 96.303 kb on + strand, within SM_b20087 at 96.348 kb on + strand at 96.349 kb on - strand at 96.512 kb on + strand at 96.513 kb on - strand at 96.513 kb on - strand at 96.749 kb on + strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.750 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.797 kb on - strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.860 kb on + strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.861 kb on - strand, within SM_b20088 at 96.866 kb on + strand, within SM_b20088 at 96.867 kb on - strand, within SM_b20088 at 96.868 kb on + strand, within SM_b20088 at 96.869 kb on - strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.937 kb on + strand, within SM_b20088 at 96.938 kb on - strand, within SM_b20088 at 96.999 kb on + strand, within SM_b20088 at 97.026 kb on + strand, within SM_b20088 at 97.187 kb on + strand, within SM_b20088
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 94,829 + -0.5 94,830 - -1.3 94,856 - -1.7 94,904 + -0.2 94,904 + -1.2 94,957 - SM_b20084 0.31 -1.4 94,957 - SM_b20084 0.31 +0.6 94,957 - SM_b20084 0.31 -1.1 94,957 - SM_b20084 0.31 +0.1 94,970 + SM_b20084 0.39 -1.3 94,979 - SM_b20084 0.44 +0.4 95,036 - SM_b20084 0.76 +0.7 95,046 + SM_b20084 0.82 +0.7 95,046 + SM_b20084 0.82 +0.4 95,046 + SM_b20084 0.82 +0.3 95,058 + SM_b20084 0.89 +0.1 95,076 + +0.3 95,077 - +0.7 95,260 + -0.9 95,268 + +0.8 95,269 - +0.1 95,694 - SM_b20086 0.73 -1.2 95,694 - SM_b20086 0.73 -0.6 95,716 - SM_b20086 0.81 +0.3 95,762 - -0.9 95,828 - +0.2 95,887 - SM_b20087 0.15 +1.0 95,942 + SM_b20087 0.24 +3.6 95,942 + SM_b20087 0.24 -1.6 95,943 - SM_b20087 0.24 -0.0 96,029 + SM_b20087 0.38 +1.1 96,030 - SM_b20087 0.38 -0.3 96,281 + SM_b20087 0.80 +0.9 96,282 - SM_b20087 0.80 +0.2 96,303 + SM_b20087 0.83 +2.0 96,348 + -0.7 96,349 - -1.4 96,512 + +0.6 96,513 - -0.5 96,513 - -0.1 96,749 + +0.3 96,750 - +0.6 96,750 - +1.6 96,750 - -0.7 96,750 - -0.2 96,751 + -0.6 96,751 + -2.1 96,752 - -1.7 96,752 - -0.5 96,752 - -1.5 96,797 - SM_b20088 0.12 -0.9 96,860 + SM_b20088 0.15 -1.6 96,860 + SM_b20088 0.15 +2.1 96,860 + SM_b20088 0.15 +1.2 96,861 - SM_b20088 0.15 -0.1 96,861 - SM_b20088 0.15 +0.1 96,861 - SM_b20088 0.15 -0.4 96,861 - SM_b20088 0.15 -0.2 96,861 - SM_b20088 0.15 -0.9 96,866 + SM_b20088 0.16 -0.7 96,867 - SM_b20088 0.16 +0.1 96,868 + SM_b20088 0.16 -0.5 96,869 - SM_b20088 0.16 -0.1 96,937 + SM_b20088 0.19 +0.1 96,937 + SM_b20088 0.19 -0.7 96,938 - SM_b20088 0.19 -1.3 96,999 + SM_b20088 0.22 -1.2 97,026 + SM_b20088 0.24 -1.1 97,187 + SM_b20088 0.32 +0.1
Or see this region's nucleotide sequence