Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20027

Experiment: perchlorate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20025 and SM_b20026 are separated by 206 nucleotidesSM_b20026 and SM_b20027 are separated by 12 nucleotidesSM_b20027 and SM_b20028 are separated by 63 nucleotides SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124 _b20025 SM_b20026: SM_b20026 - hypothetical protein, at 37,331 to 37,792 _b20026 SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310 _b20027 SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510 _b20028 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.906 kb on + strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 36.907 kb on - strand, within SM_b20025at 37.113 kb on + strandat 37.742 kb on + strand, within SM_b20026at 37.742 kb on + strand, within SM_b20026at 37.791 kb on - strandat 37.791 kb on - strandat 37.791 kb on - strandat 37.884 kb on + strandat 37.885 kb on - strandat 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.006 kb on + strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.007 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.010 kb on - strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.053 kb on + strand, within SM_b20027at 38.054 kb on - strand, within SM_b20027at 38.244 kb on - strand, within SM_b20027at 38.360 kb on - strand, within SM_b20027at 38.360 kb on - strand, within SM_b20027at 38.363 kb on + strand, within SM_b20027at 38.363 kb on + strand, within SM_b20027at 38.364 kb on - strand, within SM_b20027at 38.403 kb on - strand, within SM_b20027at 38.598 kb on + strand, within SM_b20027at 38.599 kb on - strand, within SM_b20027at 38.640 kb on - strand, within SM_b20027at 38.967 kb on - strand, within SM_b20027at 39.014 kb on + strand, within SM_b20027at 39.035 kb on + strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.036 kb on - strand, within SM_b20027at 39.044 kb on + strand, within SM_b20027at 39.044 kb on + strand, within SM_b20027at 39.360 kb on + strandat 39.360 kb on + strandat 39.405 kb on - strandat 39.451 kb on + strandat 39.452 kb on - strandat 39.452 kb on - strandat 39.452 kb on - strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.453 kb on + strandat 39.454 kb on - strandat 39.454 kb on - strandat 39.454 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.492 kb on + strand, within SM_b20028at 39.493 kb on - strand, within SM_b20028at 39.522 kb on + strand, within SM_b20028at 39.523 kb on - strand, within SM_b20028at 39.671 kb on - strand, within SM_b20028at 39.701 kb on + strand, within SM_b20028at 39.702 kb on - strand, within SM_b20028at 39.711 kb on + strand, within SM_b20028at 39.711 kb on + strand, within SM_b20028at 39.712 kb on - strand, within SM_b20028at 39.712 kb on - strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.731 kb on + strand, within SM_b20028at 39.761 kb on + strand, within SM_b20028at 39.771 kb on - strand, within SM_b20028at 39.817 kb on - strand, within SM_b20028at 39.817 kb on - strand, within SM_b20028at 39.874 kb on + strand, within SM_b20028at 39.875 kb on - strand, within SM_b20028at 39.953 kb on + strand, within SM_b20028at 39.953 kb on + strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.020 kb on - strand, within SM_b20028at 40.068 kb on + strand, within SM_b20028at 40.069 kb on - strand, within SM_b20028at 40.150 kb on - strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.173 kb on + strand, within SM_b20028at 40.174 kb on - strand, within SM_b20028at 40.239 kb on + strand, within SM_b20028

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
remove
36,906 + SM_b20025 0.78 -0.1
36,907 - SM_b20025 0.78 -0.5
36,907 - SM_b20025 0.78 +0.6
37,113 + +0.3
37,742 + SM_b20026 0.89 +2.9
37,742 + SM_b20026 0.89 -0.1
37,791 - +0.4
37,791 - -0.6
37,791 - +2.6
37,884 + -0.9
37,885 - +0.8
38,006 + SM_b20027 0.13 +1.4
38,006 + SM_b20027 0.13 +0.2
38,006 + SM_b20027 0.13 -1.3
38,006 + SM_b20027 0.13 -0.1
38,007 - SM_b20027 0.13 -1.7
38,007 - SM_b20027 0.13 -0.3
38,010 - SM_b20027 0.14 -0.2
38,010 - SM_b20027 0.14 +0.7
38,053 + SM_b20027 0.16 -1.3
38,053 + SM_b20027 0.16 -0.1
38,053 + SM_b20027 0.16 +0.7
38,054 - SM_b20027 0.17 +0.2
38,244 - SM_b20027 0.29 +3.1
38,360 - SM_b20027 0.37 -0.1
38,360 - SM_b20027 0.37 -0.1
38,363 + SM_b20027 0.37 +0.8
38,363 + SM_b20027 0.37 -0.4
38,364 - SM_b20027 0.37 -0.7
38,403 - SM_b20027 0.40 -0.9
38,598 + SM_b20027 0.53 +1.3
38,599 - SM_b20027 0.53 +0.9
38,640 - SM_b20027 0.55 +0.0
38,967 - SM_b20027 0.77 +0.1
39,014 + SM_b20027 0.80 +0.3
39,035 + SM_b20027 0.82 -0.5
39,036 - SM_b20027 0.82 -0.1
39,036 - SM_b20027 0.82 +1.1
39,036 - SM_b20027 0.82 +1.3
39,044 + SM_b20027 0.82 +0.2
39,044 + SM_b20027 0.82 +0.7
39,360 + +0.8
39,360 + -1.5
39,405 - -0.6
39,451 + -1.8
39,452 - -0.2
39,452 - +0.0
39,452 - +0.3
39,453 + +0.3
39,453 + +0.3
39,453 + -1.1
39,453 + +0.8
39,454 - +1.3
39,454 - -0.4
39,454 - -0.6
39,458 + +0.4
39,458 + -0.3
39,458 + -1.0
39,458 + -1.0
39,458 + +0.3
39,458 + -1.1
39,459 - -0.6
39,459 - -0.4
39,459 - -0.7
39,492 + SM_b20028 0.10 -0.4
39,493 - SM_b20028 0.10 -1.2
39,522 + SM_b20028 0.13 +0.7
39,523 - SM_b20028 0.13 -0.0
39,671 - SM_b20028 0.26 +3.4
39,701 + SM_b20028 0.29 -1.0
39,702 - SM_b20028 0.29 +0.1
39,711 + SM_b20028 0.30 -0.3
39,711 + SM_b20028 0.30 -0.3
39,712 - SM_b20028 0.30 +0.7
39,712 - SM_b20028 0.30 +2.3
39,731 + SM_b20028 0.31 -1.4
39,731 + SM_b20028 0.31 -0.5
39,731 + SM_b20028 0.31 -1.3
39,731 + SM_b20028 0.31 +0.1
39,761 + SM_b20028 0.34 -0.6
39,771 - SM_b20028 0.35 +0.0
39,817 - SM_b20028 0.39 +0.6
39,817 - SM_b20028 0.39 -0.5
39,874 + SM_b20028 0.44 +0.5
39,875 - SM_b20028 0.44 -0.8
39,953 + SM_b20028 0.51 +0.3
39,953 + SM_b20028 0.51 -0.7
40,020 - SM_b20028 0.57 -0.1
40,020 - SM_b20028 0.57 -0.2
40,068 + SM_b20028 0.61 -0.3
40,069 - SM_b20028 0.61 -0.8
40,150 - SM_b20028 0.68 -0.4
40,173 + SM_b20028 0.70 +2.5
40,173 + SM_b20028 0.70 -0.0
40,174 - SM_b20028 0.70 +0.2
40,239 + SM_b20028 0.76 -0.4

Or see this region's nucleotide sequence