Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34360

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34350 and RR42_RS34355 are separated by 78 nucleotidesRR42_RS34355 and RR42_RS34360 are separated by 58 nucleotidesRR42_RS34360 and RR42_RS34365 are separated by 45 nucleotidesRR42_RS34365 and RR42_RS34370 are separated by 206 nucleotides RR42_RS34350: RR42_RS34350 - blue light sensor protein, at 3,132,565 to 3,133,008 _RS34350 RR42_RS34355: RR42_RS34355 - hydratase, at 3,133,087 to 3,133,884 _RS34355 RR42_RS34360: RR42_RS34360 - transposase, at 3,133,943 to 3,135,037 _RS34360 RR42_RS34365: RR42_RS34365 - hypothetical protein, at 3,135,083 to 3,135,373 _RS34365 RR42_RS34370: RR42_RS34370 - membrane protein, at 3,135,580 to 3,136,119 _RS34370 Position (kb) 3133 3134 3135 3136Strain fitness (log2 ratio) -2 -1 0 1at 3133.204 kb on + strand, within RR42_RS34355at 3133.342 kb on + strand, within RR42_RS34355at 3133.343 kb on - strand, within RR42_RS34355at 3133.343 kb on - strand, within RR42_RS34355at 3133.475 kb on + strand, within RR42_RS34355at 3133.476 kb on - strand, within RR42_RS34355at 3133.476 kb on - strand, within RR42_RS34355at 3133.476 kb on - strand, within RR42_RS34355at 3133.517 kb on - strand, within RR42_RS34355at 3133.517 kb on - strand, within RR42_RS34355at 3133.818 kb on + strandat 3133.819 kb on - strandat 3133.835 kb on - strandat 3133.835 kb on - strandat 3133.856 kb on + strandat 3133.944 kb on + strandat 3133.961 kb on + strandat 3134.457 kb on + strand, within RR42_RS34360at 3134.828 kb on + strand, within RR42_RS34360at 3134.828 kb on + strand, within RR42_RS34360at 3134.957 kb on - strandat 3135.027 kb on - strandat 3135.058 kb on - strandat 3135.135 kb on + strand, within RR42_RS34365at 3135.135 kb on + strand, within RR42_RS34365at 3135.135 kb on + strand, within RR42_RS34365at 3135.136 kb on - strand, within RR42_RS34365at 3135.144 kb on + strand, within RR42_RS34365at 3135.159 kb on + strand, within RR42_RS34365at 3135.159 kb on + strand, within RR42_RS34365at 3135.159 kb on + strand, within RR42_RS34365at 3135.160 kb on - strand, within RR42_RS34365at 3135.167 kb on - strand, within RR42_RS34365at 3135.377 kb on + strandat 3135.523 kb on - strandat 3135.527 kb on + strandat 3135.528 kb on - strandat 3135.528 kb on - strandat 3135.528 kb on - strandat 3135.533 kb on + strandat 3135.533 kb on + strandat 3135.534 kb on - strandat 3135.534 kb on - strandat 3135.598 kb on - strandat 3135.677 kb on - strand, within RR42_RS34370at 3135.677 kb on - strand, within RR42_RS34370at 3135.677 kb on - strand, within RR42_RS34370at 3135.684 kb on - strand, within RR42_RS34370at 3135.715 kb on + strand, within RR42_RS34370at 3135.716 kb on - strand, within RR42_RS34370at 3135.947 kb on - strand, within RR42_RS34370at 3135.961 kb on + strand, within RR42_RS34370at 3135.962 kb on - strand, within RR42_RS34370at 3135.976 kb on + strand, within RR42_RS34370at 3135.976 kb on + strand, within RR42_RS34370at 3135.976 kb on + strand, within RR42_RS34370at 3135.977 kb on - strand, within RR42_RS34370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,133,204 + RR42_RS34355 0.15 -0.6
3,133,342 + RR42_RS34355 0.32 +0.3
3,133,343 - RR42_RS34355 0.32 -0.1
3,133,343 - RR42_RS34355 0.32 +0.2
3,133,475 + RR42_RS34355 0.49 +0.1
3,133,476 - RR42_RS34355 0.49 +0.1
3,133,476 - RR42_RS34355 0.49 +0.4
3,133,476 - RR42_RS34355 0.49 -0.4
3,133,517 - RR42_RS34355 0.54 +0.1
3,133,517 - RR42_RS34355 0.54 -0.4
3,133,818 + -0.8
3,133,819 - +1.0
3,133,835 - -0.3
3,133,835 - +0.1
3,133,856 + -0.3
3,133,944 + -0.1
3,133,961 + -0.1
3,134,457 + RR42_RS34360 0.47 -0.2
3,134,828 + RR42_RS34360 0.81 -0.7
3,134,828 + RR42_RS34360 0.81 -1.2
3,134,957 - -0.0
3,135,027 - +0.7
3,135,058 - +0.0
3,135,135 + RR42_RS34365 0.18 +0.7
3,135,135 + RR42_RS34365 0.18 +0.5
3,135,135 + RR42_RS34365 0.18 +0.3
3,135,136 - RR42_RS34365 0.18 +0.3
3,135,144 + RR42_RS34365 0.21 -0.4
3,135,159 + RR42_RS34365 0.26 +0.4
3,135,159 + RR42_RS34365 0.26 -1.5
3,135,159 + RR42_RS34365 0.26 -0.2
3,135,160 - RR42_RS34365 0.26 -0.6
3,135,167 - RR42_RS34365 0.29 +0.5
3,135,377 + -0.6
3,135,523 - +0.1
3,135,527 + +0.0
3,135,528 - -0.1
3,135,528 - +0.0
3,135,528 - -1.1
3,135,533 + -0.7
3,135,533 + +0.7
3,135,534 - -0.3
3,135,534 - -0.1
3,135,598 - +0.7
3,135,677 - RR42_RS34370 0.18 -1.2
3,135,677 - RR42_RS34370 0.18 +0.8
3,135,677 - RR42_RS34370 0.18 +1.0
3,135,684 - RR42_RS34370 0.19 -2.4
3,135,715 + RR42_RS34370 0.25 -0.4
3,135,716 - RR42_RS34370 0.25 +1.2
3,135,947 - RR42_RS34370 0.68 -0.2
3,135,961 + RR42_RS34370 0.71 +0.5
3,135,962 - RR42_RS34370 0.71 -0.7
3,135,976 + RR42_RS34370 0.73 -0.1
3,135,976 + RR42_RS34370 0.73 -0.5
3,135,976 + RR42_RS34370 0.73 -0.1
3,135,977 - RR42_RS34370 0.74 +1.4

Or see this region's nucleotide sequence