Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27385 and RR42_RS27390 are separated by 20 nucleotides RR42_RS27390 and RR42_RS27395 overlap by 4 nucleotides RR42_RS27395 and RR42_RS27400 are separated by 4 nucleotides
RR42_RS27385: RR42_RS27385 - aminoglycoside phosphotransferase, at 1,495,332 to 1,496,369
_RS27385
RR42_RS27390: RR42_RS27390 - acetylpolyamine aminohydrolase, at 1,496,390 to 1,497,418
_RS27390
RR42_RS27395: RR42_RS27395 - GntR family transcriptional regulator, at 1,497,415 to 1,498,140
_RS27395
RR42_RS27400: RR42_RS27400 - membrane protein, at 1,498,145 to 1,499,095
_RS27400
Position (kb)
1496
1497
1498 Strain fitness (log2 ratio)
-2
-1
0
1 at 1495.438 kb on + strand, within RR42_RS27385 at 1495.439 kb on - strand, within RR42_RS27385 at 1495.727 kb on + strand, within RR42_RS27385 at 1495.728 kb on - strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.729 kb on + strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1495.730 kb on - strand, within RR42_RS27385 at 1496.023 kb on + strand, within RR42_RS27385 at 1496.024 kb on - strand, within RR42_RS27385 at 1496.212 kb on + strand, within RR42_RS27385 at 1496.649 kb on + strand, within RR42_RS27390 at 1496.694 kb on + strand, within RR42_RS27390 at 1496.911 kb on - strand, within RR42_RS27390 at 1496.937 kb on + strand, within RR42_RS27390 at 1496.937 kb on + strand, within RR42_RS27390 at 1496.938 kb on - strand, within RR42_RS27390 at 1497.117 kb on + strand, within RR42_RS27390 at 1497.118 kb on - strand, within RR42_RS27390 at 1497.599 kb on + strand, within RR42_RS27395 at 1497.668 kb on + strand, within RR42_RS27395 at 1497.668 kb on + strand, within RR42_RS27395 at 1497.668 kb on + strand, within RR42_RS27395 at 1497.669 kb on - strand, within RR42_RS27395 at 1498.146 kb on + strand at 1498.163 kb on + strand at 1498.300 kb on + strand, within RR42_RS27400 at 1498.301 kb on - strand, within RR42_RS27400 at 1498.332 kb on + strand, within RR42_RS27400 at 1498.333 kb on - strand, within RR42_RS27400 at 1498.333 kb on - strand, within RR42_RS27400
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 1,495,438 + RR42_RS27385 0.10 +0.1 1,495,439 - RR42_RS27385 0.10 -0.0 1,495,727 + RR42_RS27385 0.38 +1.0 1,495,728 - RR42_RS27385 0.38 -0.0 1,495,729 + RR42_RS27385 0.38 -0.7 1,495,729 + RR42_RS27385 0.38 +1.3 1,495,729 + RR42_RS27385 0.38 +1.3 1,495,729 + RR42_RS27385 0.38 -0.6 1,495,730 - RR42_RS27385 0.38 -0.1 1,495,730 - RR42_RS27385 0.38 +0.4 1,495,730 - RR42_RS27385 0.38 -0.2 1,495,730 - RR42_RS27385 0.38 -0.9 1,496,023 + RR42_RS27385 0.67 +1.0 1,496,024 - RR42_RS27385 0.67 -0.6 1,496,212 + RR42_RS27385 0.85 -0.5 1,496,649 + RR42_RS27390 0.25 -0.5 1,496,694 + RR42_RS27390 0.30 -0.7 1,496,911 - RR42_RS27390 0.51 -0.2 1,496,937 + RR42_RS27390 0.53 -0.4 1,496,937 + RR42_RS27390 0.53 -2.0 1,496,938 - RR42_RS27390 0.53 +0.4 1,497,117 + RR42_RS27390 0.71 -0.8 1,497,118 - RR42_RS27390 0.71 +0.1 1,497,599 + RR42_RS27395 0.25 +0.4 1,497,668 + RR42_RS27395 0.35 -0.5 1,497,668 + RR42_RS27395 0.35 +1.1 1,497,668 + RR42_RS27395 0.35 +1.1 1,497,669 - RR42_RS27395 0.35 +0.0 1,498,146 + +0.7 1,498,163 + +0.1 1,498,300 + RR42_RS27400 0.16 -0.4 1,498,301 - RR42_RS27400 0.16 +0.1 1,498,332 + RR42_RS27400 0.20 +0.1 1,498,333 - RR42_RS27400 0.20 -1.0 1,498,333 - RR42_RS27400 0.20 +0.1
Or see this region's nucleotide sequence