Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24495 and RR42_RS24500 are separated by 410 nucleotides RR42_RS24500 and RR42_RS24505 are separated by 1 nucleotides RR42_RS24505 and RR42_RS24510 are separated by 8 nucleotides RR42_RS24510 and RR42_RS24515 overlap by 4 nucleotides
RR42_RS24495: RR42_RS24495 - hypothetical protein, at 828,524 to 829,540
_RS24495
RR42_RS24500: RR42_RS24500 - hypothetical protein, at 829,951 to 830,262
_RS24500
RR42_RS24505: RR42_RS24505 - hypothetical protein, at 830,264 to 831,919
_RS24505
RR42_RS24510: RR42_RS24510 - hypothetical protein, at 831,928 to 832,356
_RS24510
RR42_RS24515: RR42_RS24515 - hypothetical protein, at 832,353 to 833,003
_RS24515
Position (kb) 830
831
832 Strain fitness (log2 ratio) -1
0
1
2 at 829.414 kb on - strand, within RR42_RS24495 at 829.555 kb on + strand at 829.555 kb on + strand at 829.556 kb on - strand at 829.561 kb on + strand at 829.562 kb on - strand at 829.667 kb on + strand at 829.667 kb on + strand at 829.668 kb on - strand at 829.829 kb on + strand at 829.829 kb on + strand at 829.830 kb on - strand at 829.992 kb on - strand, within RR42_RS24500 at 830.128 kb on - strand, within RR42_RS24500 at 830.128 kb on - strand, within RR42_RS24500 at 830.166 kb on + strand, within RR42_RS24500 at 830.169 kb on + strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.173 kb on + strand, within RR42_RS24500 at 830.174 kb on - strand, within RR42_RS24500 at 830.235 kb on + strand at 830.238 kb on + strand at 830.238 kb on + strand at 830.238 kb on + strand at 830.239 kb on - strand at 830.239 kb on - strand at 830.312 kb on - strand at 830.397 kb on + strand at 830.398 kb on - strand at 830.606 kb on - strand, within RR42_RS24505 at 830.646 kb on + strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.784 kb on + strand, within RR42_RS24505 at 830.871 kb on - strand, within RR42_RS24505 at 830.893 kb on + strand, within RR42_RS24505 at 830.894 kb on - strand, within RR42_RS24505 at 830.905 kb on + strand, within RR42_RS24505 at 830.915 kb on - strand, within RR42_RS24505 at 830.919 kb on - strand, within RR42_RS24505 at 831.111 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.399 kb on + strand, within RR42_RS24505 at 831.425 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.444 kb on + strand, within RR42_RS24505 at 831.445 kb on - strand, within RR42_RS24505 at 831.529 kb on - strand, within RR42_RS24505 at 831.570 kb on + strand, within RR42_RS24505 at 831.623 kb on + strand, within RR42_RS24505 at 831.750 kb on + strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.751 kb on - strand, within RR42_RS24505 at 831.764 kb on + strand at 831.767 kb on + strand at 831.767 kb on + strand at 831.768 kb on - strand at 831.768 kb on - strand at 831.817 kb on - strand at 831.933 kb on + strand at 831.934 kb on - strand at 832.212 kb on + strand, within RR42_RS24510 at 832.213 kb on - strand, within RR42_RS24510 at 832.670 kb on + strand, within RR42_RS24515 at 832.671 kb on - strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.756 kb on + strand, within RR42_RS24515 at 832.793 kb on - strand, within RR42_RS24515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 829,414 - RR42_RS24495 0.88 +1.4 829,555 + -1.0 829,555 + -0.3 829,556 - -0.8 829,561 + +0.0 829,562 - -0.0 829,667 + -0.1 829,667 + -0.7 829,668 - +2.1 829,829 + +0.3 829,829 + +0.1 829,830 - +1.0 829,992 - RR42_RS24500 0.13 +1.3 830,128 - RR42_RS24500 0.57 +1.4 830,128 - RR42_RS24500 0.57 +0.9 830,166 + RR42_RS24500 0.69 -0.7 830,169 + RR42_RS24500 0.70 -0.1 830,170 - RR42_RS24500 0.70 +0.8 830,170 - RR42_RS24500 0.70 +1.5 830,170 - RR42_RS24500 0.70 +0.9 830,173 + RR42_RS24500 0.71 +1.9 830,174 - RR42_RS24500 0.71 +0.2 830,235 + +0.3 830,238 + +0.1 830,238 + -0.1 830,238 + -1.5 830,239 - +0.4 830,239 - +1.3 830,312 - +1.6 830,397 + -0.0 830,398 - +2.0 830,606 - RR42_RS24505 0.21 +1.5 830,646 + RR42_RS24505 0.23 -0.3 830,647 - RR42_RS24505 0.23 +0.8 830,647 - RR42_RS24505 0.23 +1.8 830,647 - RR42_RS24505 0.23 +1.4 830,647 - RR42_RS24505 0.23 +2.0 830,647 - RR42_RS24505 0.23 +1.9 830,736 - RR42_RS24505 0.29 +1.3 830,736 - RR42_RS24505 0.29 +0.8 830,736 - RR42_RS24505 0.29 +0.8 830,784 + RR42_RS24505 0.31 -0.0 830,871 - RR42_RS24505 0.37 +1.3 830,893 + RR42_RS24505 0.38 +0.2 830,894 - RR42_RS24505 0.38 -1.7 830,905 + RR42_RS24505 0.39 -0.2 830,915 - RR42_RS24505 0.39 -0.9 830,919 - RR42_RS24505 0.40 +0.0 831,111 - RR42_RS24505 0.51 -1.3 831,214 - RR42_RS24505 0.57 +0.9 831,214 - RR42_RS24505 0.57 -0.5 831,399 + RR42_RS24505 0.69 -0.8 831,425 + RR42_RS24505 0.70 -0.2 831,444 + RR42_RS24505 0.71 -1.0 831,444 + RR42_RS24505 0.71 +1.4 831,445 - RR42_RS24505 0.71 +1.0 831,529 - RR42_RS24505 0.76 +1.0 831,570 + RR42_RS24505 0.79 -0.1 831,623 + RR42_RS24505 0.82 +0.1 831,750 + RR42_RS24505 0.90 +0.7 831,751 - RR42_RS24505 0.90 +0.4 831,751 - RR42_RS24505 0.90 +1.3 831,764 + -0.1 831,767 + +0.9 831,767 + -0.2 831,768 - +2.4 831,768 - +0.3 831,817 - +0.0 831,933 + -0.7 831,934 - +0.6 832,212 + RR42_RS24510 0.66 +0.0 832,213 - RR42_RS24510 0.66 +0.5 832,670 + RR42_RS24515 0.49 -0.8 832,671 - RR42_RS24515 0.49 -1.5 832,756 + RR42_RS24515 0.62 +1.4 832,756 + RR42_RS24515 0.62 +0.1 832,793 - RR42_RS24515 0.68 -0.7
Or see this region's nucleotide sequence