Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24320

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24310 and RR42_RS24315 are separated by 422 nucleotidesRR42_RS24315 and RR42_RS24320 overlap by 1 nucleotidesRR42_RS24320 and RR42_RS24325 are separated by 10 nucleotides RR42_RS24310: RR42_RS24310 - dehydratase, at 782,721 to 783,230 _RS24310 RR42_RS24315: RR42_RS24315 - acyl dehydratase, at 783,653 to 784,138 _RS24315 RR42_RS24320: RR42_RS24320 - formyl-CoA transferase, at 784,138 to 785,361 _RS24320 RR42_RS24325: RR42_RS24325 - citryl-CoA lyase, at 785,372 to 786,295 _RS24325 Position (kb) 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 783.238 kb on - strandat 783.238 kb on - strandat 783.243 kb on - strandat 783.259 kb on + strandat 783.286 kb on + strandat 783.360 kb on + strandat 783.382 kb on - strandat 783.405 kb on + strandat 783.406 kb on - strandat 783.485 kb on - strandat 783.582 kb on - strandat 783.658 kb on + strandat 783.692 kb on + strandat 783.693 kb on - strandat 783.769 kb on + strand, within RR42_RS24315at 783.770 kb on - strand, within RR42_RS24315at 783.770 kb on - strand, within RR42_RS24315at 783.771 kb on + strand, within RR42_RS24315at 783.778 kb on + strand, within RR42_RS24315at 783.779 kb on - strand, within RR42_RS24315at 783.779 kb on - strand, within RR42_RS24315at 783.784 kb on + strand, within RR42_RS24315at 783.785 kb on - strand, within RR42_RS24315at 783.850 kb on - strand, within RR42_RS24315at 783.850 kb on - strand, within RR42_RS24315at 783.918 kb on + strand, within RR42_RS24315at 783.918 kb on + strand, within RR42_RS24315at 783.918 kb on + strand, within RR42_RS24315at 783.918 kb on + strand, within RR42_RS24315at 783.918 kb on + strand, within RR42_RS24315at 783.919 kb on - strand, within RR42_RS24315at 783.919 kb on - strand, within RR42_RS24315at 783.919 kb on - strand, within RR42_RS24315at 783.919 kb on - strand, within RR42_RS24315at 783.919 kb on - strand, within RR42_RS24315at 783.986 kb on + strand, within RR42_RS24315at 783.986 kb on + strand, within RR42_RS24315at 784.033 kb on + strand, within RR42_RS24315at 784.034 kb on - strand, within RR42_RS24315at 784.034 kb on - strand, within RR42_RS24315at 784.081 kb on - strand, within RR42_RS24315at 784.101 kb on + strandat 784.101 kb on + strandat 784.185 kb on + strandat 784.185 kb on + strandat 784.186 kb on - strandat 784.186 kb on - strandat 784.216 kb on - strandat 784.216 kb on - strandat 784.406 kb on + strand, within RR42_RS24320at 784.407 kb on - strand, within RR42_RS24320at 784.447 kb on + strand, within RR42_RS24320at 784.460 kb on + strand, within RR42_RS24320at 784.519 kb on + strand, within RR42_RS24320at 784.519 kb on + strand, within RR42_RS24320at 784.520 kb on - strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.689 kb on + strand, within RR42_RS24320at 784.690 kb on - strand, within RR42_RS24320at 784.726 kb on - strand, within RR42_RS24320at 784.726 kb on - strand, within RR42_RS24320at 784.732 kb on - strand, within RR42_RS24320at 784.791 kb on - strand, within RR42_RS24320at 784.791 kb on - strand, within RR42_RS24320at 784.851 kb on + strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.902 kb on + strand, within RR42_RS24320at 784.903 kb on - strand, within RR42_RS24320at 784.940 kb on + strand, within RR42_RS24320at 784.940 kb on + strand, within RR42_RS24320at 784.941 kb on - strand, within RR42_RS24320at 784.987 kb on - strand, within RR42_RS24320at 785.007 kb on + strand, within RR42_RS24320at 785.007 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.028 kb on - strand, within RR42_RS24320at 785.030 kb on - strand, within RR42_RS24320at 785.058 kb on + strand, within RR42_RS24320at 785.117 kb on - strand, within RR42_RS24320at 785.178 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.311 kb on + strandat 785.312 kb on - strandat 785.359 kb on + strandat 785.359 kb on + strandat 785.360 kb on - strandat 785.487 kb on + strand, within RR42_RS24325at 785.488 kb on - strand, within RR42_RS24325at 785.523 kb on + strand, within RR42_RS24325at 785.524 kb on - strand, within RR42_RS24325at 785.542 kb on + strand, within RR42_RS24325at 785.543 kb on - strand, within RR42_RS24325at 785.615 kb on + strand, within RR42_RS24325at 785.615 kb on + strand, within RR42_RS24325at 785.616 kb on - strand, within RR42_RS24325at 785.616 kb on - strand, within RR42_RS24325at 785.621 kb on + strand, within RR42_RS24325at 785.622 kb on - strand, within RR42_RS24325at 785.622 kb on - strand, within RR42_RS24325at 785.629 kb on + strand, within RR42_RS24325at 785.674 kb on + strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.727 kb on + strand, within RR42_RS24325at 785.765 kb on - strand, within RR42_RS24325at 785.782 kb on + strand, within RR42_RS24325at 785.908 kb on + strand, within RR42_RS24325at 785.909 kb on - strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.933 kb on - strand, within RR42_RS24325at 785.942 kb on + strand, within RR42_RS24325at 785.942 kb on + strand, within RR42_RS24325at 786.032 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.163 kb on - strand, within RR42_RS24325at 786.163 kb on - strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.174 kb on - strand, within RR42_RS24325at 786.174 kb on - strand, within RR42_RS24325at 786.177 kb on + strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.208 kb on + strandat 786.259 kb on + strandat 786.259 kb on + strandat 786.259 kb on + strandat 786.260 kb on - strandat 786.260 kb on - strandat 786.260 kb on - strandat 786.285 kb on - strandat 786.293 kb on + strandat 786.299 kb on + strandat 786.299 kb on + strandat 786.299 kb on + strandat 786.318 kb on + strandat 786.349 kb on + strandat 786.350 kb on - strandat 786.356 kb on + strandat 786.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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783,238 - -0.4
783,238 - -0.9
783,243 - -0.0
783,259 + +0.2
783,286 + -0.0
783,360 + -1.0
783,382 - -0.5
783,405 + -0.8
783,406 - +0.6
783,485 - +2.1
783,582 - +0.9
783,658 + +0.4
783,692 + +0.1
783,693 - -0.6
783,769 + RR42_RS24315 0.24 +1.5
783,770 - RR42_RS24315 0.24 +0.1
783,770 - RR42_RS24315 0.24 -0.4
783,771 + RR42_RS24315 0.24 +0.8
783,778 + RR42_RS24315 0.26 -0.1
783,779 - RR42_RS24315 0.26 -0.2
783,779 - RR42_RS24315 0.26 +1.2
783,784 + RR42_RS24315 0.27 +0.2
783,785 - RR42_RS24315 0.27 -0.3
783,850 - RR42_RS24315 0.41 -3.2
783,850 - RR42_RS24315 0.41 +0.5
783,918 + RR42_RS24315 0.55 -1.9
783,918 + RR42_RS24315 0.55 -1.3
783,918 + RR42_RS24315 0.55 +1.7
783,918 + RR42_RS24315 0.55 +1.5
783,918 + RR42_RS24315 0.55 -0.1
783,919 - RR42_RS24315 0.55 -0.2
783,919 - RR42_RS24315 0.55 -1.3
783,919 - RR42_RS24315 0.55 +0.4
783,919 - RR42_RS24315 0.55 -1.4
783,919 - RR42_RS24315 0.55 -0.7
783,986 + RR42_RS24315 0.69 +0.8
783,986 + RR42_RS24315 0.69 -0.1
784,033 + RR42_RS24315 0.78 +0.6
784,034 - RR42_RS24315 0.78 +0.9
784,034 - RR42_RS24315 0.78 +0.4
784,081 - RR42_RS24315 0.88 -1.1
784,101 + +1.0
784,101 + +0.5
784,185 + +0.9
784,185 + +0.5
784,186 - -1.0
784,186 - -0.3
784,216 - -0.7
784,216 - +0.0
784,406 + RR42_RS24320 0.22 -0.3
784,407 - RR42_RS24320 0.22 +1.0
784,447 + RR42_RS24320 0.25 -0.8
784,460 + RR42_RS24320 0.26 +0.9
784,519 + RR42_RS24320 0.31 -0.4
784,519 + RR42_RS24320 0.31 -0.1
784,520 - RR42_RS24320 0.31 +0.1
784,567 + RR42_RS24320 0.35 +0.9
784,567 + RR42_RS24320 0.35 -0.4
784,567 + RR42_RS24320 0.35 +0.8
784,567 + RR42_RS24320 0.35 +0.2
784,568 - RR42_RS24320 0.35 -0.3
784,568 - RR42_RS24320 0.35 -0.9
784,568 - RR42_RS24320 0.35 +0.4
784,689 + RR42_RS24320 0.45 +0.0
784,690 - RR42_RS24320 0.45 -1.4
784,726 - RR42_RS24320 0.48 +0.5
784,726 - RR42_RS24320 0.48 -0.0
784,732 - RR42_RS24320 0.49 +0.6
784,791 - RR42_RS24320 0.53 -0.3
784,791 - RR42_RS24320 0.53 +0.9
784,851 + RR42_RS24320 0.58 +0.3
784,852 - RR42_RS24320 0.58 +0.7
784,852 - RR42_RS24320 0.58 -0.1
784,852 - RR42_RS24320 0.58 -0.7
784,902 + RR42_RS24320 0.62 +0.4
784,903 - RR42_RS24320 0.62 -0.7
784,940 + RR42_RS24320 0.66 +1.0
784,940 + RR42_RS24320 0.66 +0.2
784,941 - RR42_RS24320 0.66 +0.0
784,987 - RR42_RS24320 0.69 -0.1
785,007 + RR42_RS24320 0.71 +0.3
785,007 + RR42_RS24320 0.71 -0.9
785,027 + RR42_RS24320 0.73 -0.4
785,027 + RR42_RS24320 0.73 -1.0
785,027 + RR42_RS24320 0.73 +1.2
785,028 - RR42_RS24320 0.73 +0.4
785,030 - RR42_RS24320 0.73 -0.9
785,058 + RR42_RS24320 0.75 -1.4
785,117 - RR42_RS24320 0.80 -0.1
785,178 - RR42_RS24320 0.85 -0.5
785,193 - RR42_RS24320 0.86 -0.2
785,193 - RR42_RS24320 0.86 +0.0
785,193 - RR42_RS24320 0.86 +0.0
785,193 - RR42_RS24320 0.86 -0.9
785,193 - RR42_RS24320 0.86 -0.2
785,311 + +0.0
785,312 - +0.0
785,359 + +0.5
785,359 + -0.8
785,360 - -0.0
785,487 + RR42_RS24325 0.12 -0.7
785,488 - RR42_RS24325 0.13 +0.8
785,523 + RR42_RS24325 0.16 +0.7
785,524 - RR42_RS24325 0.16 -0.4
785,542 + RR42_RS24325 0.18 +0.1
785,543 - RR42_RS24325 0.19 +0.5
785,615 + RR42_RS24325 0.26 -0.0
785,615 + RR42_RS24325 0.26 +0.6
785,616 - RR42_RS24325 0.26 +0.2
785,616 - RR42_RS24325 0.26 -0.1
785,621 + RR42_RS24325 0.27 +1.5
785,622 - RR42_RS24325 0.27 -0.3
785,622 - RR42_RS24325 0.27 +0.1
785,629 + RR42_RS24325 0.28 -1.2
785,674 + RR42_RS24325 0.33 +0.0
785,675 - RR42_RS24325 0.33 +1.3
785,675 - RR42_RS24325 0.33 -0.7
785,675 - RR42_RS24325 0.33 -0.6
785,675 - RR42_RS24325 0.33 -0.1
785,727 + RR42_RS24325 0.38 -0.5
785,765 - RR42_RS24325 0.43 +0.2
785,782 + RR42_RS24325 0.44 -1.6
785,908 + RR42_RS24325 0.58 +0.4
785,909 - RR42_RS24325 0.58 -0.7
785,932 + RR42_RS24325 0.61 +1.1
785,932 + RR42_RS24325 0.61 -1.0
785,932 + RR42_RS24325 0.61 -0.0
785,933 - RR42_RS24325 0.61 +0.5
785,942 + RR42_RS24325 0.62 +0.6
785,942 + RR42_RS24325 0.62 -0.5
786,032 + RR42_RS24325 0.71 -0.5
786,162 + RR42_RS24325 0.85 +0.4
786,162 + RR42_RS24325 0.85 -1.5
786,162 + RR42_RS24325 0.85 +0.5
786,163 - RR42_RS24325 0.86 +0.1
786,163 - RR42_RS24325 0.86 +0.2
786,173 + RR42_RS24325 0.87 +1.2
786,173 + RR42_RS24325 0.87 +1.0
786,173 + RR42_RS24325 0.87 +1.5
786,173 + RR42_RS24325 0.87 -0.7
786,173 + RR42_RS24325 0.87 +1.1
786,173 + RR42_RS24325 0.87 +1.0
786,174 - RR42_RS24325 0.87 -0.8
786,174 - RR42_RS24325 0.87 +0.4
786,177 + RR42_RS24325 0.87 +0.2
786,178 - RR42_RS24325 0.87 -0.8
786,178 - RR42_RS24325 0.87 +1.0
786,178 - RR42_RS24325 0.87 -0.9
786,208 + +0.1
786,259 + -0.0
786,259 + -0.6
786,259 + +0.2
786,260 - -0.8
786,260 - -0.4
786,260 - -0.6
786,285 - -0.7
786,293 + +2.0
786,299 + +0.3
786,299 + -0.3
786,299 + -0.1
786,318 + +0.4
786,349 + +1.9
786,350 - +0.8
786,356 + -0.4
786,357 - +0.5

Or see this region's nucleotide sequence