Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22640 and RR42_RS22645 are separated by 344 nucleotides RR42_RS22645 and RR42_RS22650 are separated by 230 nucleotides
RR42_RS22640: RR42_RS22640 - CAAX amino protease, at 413,175 to 413,963
_RS22640
RR42_RS22645: RR42_RS22645 - GntR family transcriptional regulator, at 414,308 to 415,360
_RS22645
RR42_RS22650: RR42_RS22650 - ABC transporter substrate-binding protein, at 415,591 to 416,580
_RS22650
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1 at 413.392 kb on + strand, within RR42_RS22640 at 413.392 kb on + strand, within RR42_RS22640 at 413.393 kb on - strand, within RR42_RS22640 at 413.440 kb on + strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.480 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.824 kb on + strand, within RR42_RS22640 at 413.908 kb on - strand at 414.010 kb on + strand at 414.010 kb on + strand at 414.033 kb on - strand at 414.074 kb on + strand at 414.172 kb on + strand at 414.203 kb on - strand at 414.223 kb on - strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.382 kb on - strand at 414.476 kb on + strand, within RR42_RS22645 at 414.476 kb on + strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.869 kb on + strand, within RR42_RS22645 at 415.388 kb on + strand at 415.527 kb on + strand at 415.527 kb on + strand at 415.687 kb on + strand at 415.688 kb on - strand at 415.870 kb on + strand, within RR42_RS22650 at 415.871 kb on - strand, within RR42_RS22650 at 415.912 kb on + strand, within RR42_RS22650 at 415.913 kb on - strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.159 kb on - strand, within RR42_RS22650 at 416.277 kb on - strand, within RR42_RS22650 at 416.302 kb on + strand, within RR42_RS22650
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 413,392 + RR42_RS22640 0.28 +1.0 413,392 + RR42_RS22640 0.28 +0.0 413,393 - RR42_RS22640 0.28 -0.4 413,440 + RR42_RS22640 0.34 -0.5 413,441 - RR42_RS22640 0.34 -1.7 413,441 - RR42_RS22640 0.34 -1.3 413,480 - RR42_RS22640 0.39 -0.6 413,780 - RR42_RS22640 0.77 -2.0 413,780 - RR42_RS22640 0.77 -0.8 413,824 + RR42_RS22640 0.82 -1.3 413,908 - -0.1 414,010 + +0.4 414,010 + -0.3 414,033 - +0.4 414,074 + -0.4 414,172 + -0.6 414,203 - -0.8 414,223 - -0.5 414,381 + +0.3 414,381 + +0.0 414,381 + -0.5 414,381 + +0.5 414,382 - -0.4 414,476 + RR42_RS22645 0.16 -0.2 414,476 + RR42_RS22645 0.16 -0.5 414,782 - RR42_RS22645 0.45 +0.2 414,782 - RR42_RS22645 0.45 -1.6 414,782 - RR42_RS22645 0.45 -0.8 414,869 + RR42_RS22645 0.53 +0.7 415,388 + -0.1 415,527 + -0.3 415,527 + +0.2 415,687 + -0.5 415,688 - +0.5 415,870 + RR42_RS22650 0.28 +0.2 415,871 - RR42_RS22650 0.28 +0.2 415,912 + RR42_RS22650 0.32 -0.3 415,913 - RR42_RS22650 0.33 +0.1 415,921 + RR42_RS22650 0.33 +0.6 415,921 + RR42_RS22650 0.33 -0.0 415,922 - RR42_RS22650 0.33 +0.1 415,922 - RR42_RS22650 0.33 +0.4 415,922 - RR42_RS22650 0.33 +0.5 415,922 - RR42_RS22650 0.33 -0.1 416,065 + RR42_RS22650 0.48 -1.8 416,065 + RR42_RS22650 0.48 +0.1 416,158 + RR42_RS22650 0.57 -0.6 416,158 + RR42_RS22650 0.57 +0.6 416,159 - RR42_RS22650 0.57 -1.0 416,277 - RR42_RS22650 0.69 +0.2 416,302 + RR42_RS22650 0.72 +0.2
Or see this region's nucleotide sequence