Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21960 and RR42_RS21965 are separated by 126 nucleotides RR42_RS21965 and RR42_RS21970 are separated by 923 nucleotides
RR42_RS21960: RR42_RS21960 - cysteine synthase, at 252,293 to 253,210
_RS21960
RR42_RS21965: RR42_RS21965 - hypothetical protein, at 253,337 to 254,548
_RS21965
RR42_RS21970: RR42_RS21970 - hypothetical protein, at 255,472 to 258,339
_RS21970
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 252.549 kb on - strand, within RR42_RS21960 at 252.618 kb on + strand, within RR42_RS21960 at 252.619 kb on - strand, within RR42_RS21960 at 252.670 kb on + strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.766 kb on + strand, within RR42_RS21960 at 252.891 kb on + strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.995 kb on - strand, within RR42_RS21960 at 253.174 kb on + strand at 253.175 kb on - strand at 253.215 kb on + strand at 253.215 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.437 kb on + strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.622 kb on - strand, within RR42_RS21965 at 253.622 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.759 kb on - strand, within RR42_RS21965 at 254.046 kb on + strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965 at 254.616 kb on + strand at 254.617 kb on - strand at 254.623 kb on + strand at 254.623 kb on + strand at 254.624 kb on - strand at 254.630 kb on + strand at 254.631 kb on - strand at 254.754 kb on + strand at 254.831 kb on + strand at 254.949 kb on + strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.950 kb on - strand at 254.957 kb on + strand at 254.957 kb on + strand at 254.957 kb on + strand at 254.958 kb on - strand at 254.958 kb on - strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.135 kb on + strand at 255.136 kb on - strand at 255.136 kb on - strand at 255.149 kb on + strand at 255.156 kb on - strand at 255.156 kb on - strand at 255.163 kb on + strand at 255.163 kb on + strand at 255.164 kb on - strand at 255.164 kb on - strand at 255.164 kb on - strand at 255.165 kb on + strand at 255.165 kb on + strand at 255.210 kb on + strand at 255.210 kb on + strand at 255.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 252,549 - RR42_RS21960 0.28 +0.6 252,618 + RR42_RS21960 0.35 -2.2 252,619 - RR42_RS21960 0.36 +1.5 252,670 + RR42_RS21960 0.41 +0.1 252,671 - RR42_RS21960 0.41 -0.5 252,671 - RR42_RS21960 0.41 +0.4 252,766 + RR42_RS21960 0.52 +1.6 252,891 + RR42_RS21960 0.65 +0.7 252,955 - RR42_RS21960 0.72 -1.4 252,955 - RR42_RS21960 0.72 +0.1 252,995 - RR42_RS21960 0.76 +0.2 253,174 + -0.0 253,175 - +0.1 253,215 + +0.3 253,215 + -0.5 253,318 + +1.1 253,318 + -0.1 253,318 + +0.2 253,318 + -0.2 253,319 - -2.2 253,319 - -0.2 253,319 - +0.7 253,339 - -0.0 253,339 - -0.0 253,339 - +0.9 253,437 + -0.3 253,438 - +0.0 253,438 - +2.4 253,438 - -0.3 253,622 - RR42_RS21965 0.24 +0.2 253,622 - RR42_RS21965 0.24 -0.9 253,748 - RR42_RS21965 0.34 +0.5 253,748 - RR42_RS21965 0.34 +0.1 253,759 - RR42_RS21965 0.35 +1.7 254,046 + RR42_RS21965 0.58 -1.4 254,047 - RR42_RS21965 0.59 +0.3 254,047 - RR42_RS21965 0.59 +1.4 254,181 + RR42_RS21965 0.70 +1.1 254,181 + RR42_RS21965 0.70 +1.1 254,616 + +0.2 254,617 - +0.6 254,623 + -0.7 254,623 + +0.5 254,624 - -0.4 254,630 + +0.4 254,631 - -0.3 254,754 + -0.3 254,831 + -0.1 254,949 + -0.6 254,950 - -0.3 254,950 - -0.3 254,950 - +0.8 254,950 - -3.2 254,950 - -0.6 254,957 + +0.0 254,957 + +0.7 254,957 + +0.3 254,958 - -0.1 254,958 - +0.6 255,135 + -0.5 255,135 + +2.1 255,135 + +0.1 255,135 + +0.1 255,135 + +0.2 255,136 - -0.4 255,136 - +0.5 255,149 + +1.3 255,156 - +0.8 255,156 - -0.4 255,163 + -0.2 255,163 + -0.3 255,164 - -1.7 255,164 - +0.7 255,164 - -0.0 255,165 + -0.5 255,165 + -0.1 255,210 + -0.1 255,210 + -1.0 255,211 - +0.1
Or see this region's nucleotide sequence