Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14995

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14990 and RR42_RS14995 are separated by 184 nucleotidesRR42_RS14995 and RR42_RS15000 are separated by 65 nucleotides RR42_RS14990: RR42_RS14990 - membrane protein, at 3,240,471 to 3,241,745 _RS14990 RR42_RS14995: RR42_RS14995 - tRNA threonylcarbamoyladenosine modification protein TsaD, at 3,241,930 to 3,242,970 _RS14995 RR42_RS15000: RR42_RS15000 - GTP cyclohydrolase, at 3,243,036 to 3,243,839 _RS15000 Position (kb) 3241 3242 3243Strain fitness (log2 ratio) -1 0 1 2at 3241.471 kb on + strand, within RR42_RS14990at 3241.471 kb on + strand, within RR42_RS14990at 3241.774 kb on - strandat 3241.830 kb on + strandat 3242.990 kb on + strandat 3242.990 kb on + strandat 3243.037 kb on + strandat 3243.037 kb on + strandat 3243.071 kb on - strandat 3243.118 kb on + strand, within RR42_RS15000at 3243.119 kb on - strand, within RR42_RS15000at 3243.119 kb on - strand, within RR42_RS15000at 3243.119 kb on - strand, within RR42_RS15000at 3243.463 kb on + strand, within RR42_RS15000at 3243.463 kb on + strand, within RR42_RS15000at 3243.464 kb on - strand, within RR42_RS15000at 3243.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,241,471 + RR42_RS14990 0.78 +0.3
3,241,471 + RR42_RS14990 0.78 -0.6
3,241,774 - +0.3
3,241,830 + -0.4
3,242,990 + +0.3
3,242,990 + -0.3
3,243,037 + +0.4
3,243,037 + -0.2
3,243,071 - +0.8
3,243,118 + RR42_RS15000 0.10 +0.3
3,243,119 - RR42_RS15000 0.10 +2.4
3,243,119 - RR42_RS15000 0.10 -0.4
3,243,119 - RR42_RS15000 0.10 -0.4
3,243,463 + RR42_RS15000 0.53 -0.3
3,243,463 + RR42_RS15000 0.53 +0.7
3,243,464 - RR42_RS15000 0.53 -1.3
3,243,858 - -0.4

Or see this region's nucleotide sequence