Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00855 and RR42_RS00860 are separated by 198 nucleotides RR42_RS00860 and RR42_RS00865 are separated by 85 nucleotides RR42_RS00865 and RR42_RS00870 are separated by 72 nucleotides
RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599
_RS00855
RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232
_RS00860
RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776
_RS00865
RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039
_RS00870
Position (kb) 209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.511 kb on + strand at 208.511 kb on + strand at 208.676 kb on - strand at 208.706 kb on + strand at 208.743 kb on + strand at 208.744 kb on - strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.826 kb on - strand at 208.826 kb on - strand at 208.882 kb on + strand, within RR42_RS00860 at 208.945 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.151 kb on - strand, within RR42_RS00860 at 209.233 kb on + strand at 209.242 kb on - strand at 209.280 kb on - strand at 209.290 kb on - strand at 209.295 kb on - strand at 209.455 kb on + strand, within RR42_RS00865 at 209.455 kb on + strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.592 kb on - strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.691 kb on + strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.692 kb on - strand, within RR42_RS00865 at 209.693 kb on + strand, within RR42_RS00865 at 209.693 kb on + strand, within RR42_RS00865 at 209.693 kb on + strand, within RR42_RS00865 at 209.693 kb on + strand, within RR42_RS00865 at 209.694 kb on - strand, within RR42_RS00865 at 209.694 kb on - strand, within RR42_RS00865 at 209.694 kb on - strand, within RR42_RS00865 at 209.695 kb on + strand, within RR42_RS00865 at 209.695 kb on + strand, within RR42_RS00865 at 209.695 kb on + strand, within RR42_RS00865 at 209.695 kb on + strand, within RR42_RS00865 at 209.696 kb on - strand, within RR42_RS00865 at 209.696 kb on - strand, within RR42_RS00865 at 209.696 kb on - strand, within RR42_RS00865 at 209.764 kb on - strand at 209.801 kb on + strand at 209.802 kb on - strand at 209.802 kb on - strand at 209.802 kb on - strand at 209.901 kb on + strand at 209.901 kb on + strand at 209.901 kb on + strand at 209.901 kb on + strand at 209.901 kb on + strand at 209.902 kb on - strand at 209.902 kb on - strand at 209.902 kb on - strand at 209.902 kb on - strand at 209.902 kb on - strand at 209.902 kb on - strand at 209.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 208,511 + -0.1 208,511 + +0.2 208,676 - +2.2 208,706 + -0.4 208,743 + +1.1 208,744 - +0.5 208,825 + -0.7 208,825 + +0.2 208,825 + +0.2 208,825 + +1.3 208,826 - +0.2 208,826 - +0.2 208,882 + RR42_RS00860 0.19 -0.4 208,945 - RR42_RS00860 0.34 -0.1 209,036 - RR42_RS00860 0.55 -0.3 209,036 - RR42_RS00860 0.55 -0.4 209,151 - RR42_RS00860 0.81 -0.8 209,233 + +0.2 209,242 - -0.3 209,280 - +1.2 209,290 - +1.9 209,295 - +1.0 209,455 + RR42_RS00865 0.30 +0.7 209,455 + RR42_RS00865 0.30 +1.0 209,456 - RR42_RS00865 0.30 -0.4 209,456 - RR42_RS00865 0.30 -0.2 209,456 - RR42_RS00865 0.30 +0.5 209,456 - RR42_RS00865 0.30 -0.3 209,591 + RR42_RS00865 0.59 -2.4 209,591 + RR42_RS00865 0.59 +0.9 209,592 - RR42_RS00865 0.60 -1.4 209,691 + RR42_RS00865 0.81 -0.3 209,691 + RR42_RS00865 0.81 +0.3 209,691 + RR42_RS00865 0.81 -0.1 209,691 + RR42_RS00865 0.81 +0.3 209,691 + RR42_RS00865 0.81 +0.2 209,691 + RR42_RS00865 0.81 -0.3 209,691 + RR42_RS00865 0.81 -0.2 209,691 + RR42_RS00865 0.81 +0.3 209,692 - RR42_RS00865 0.81 -0.1 209,692 - RR42_RS00865 0.81 -0.9 209,692 - RR42_RS00865 0.81 -0.6 209,692 - RR42_RS00865 0.81 +0.4 209,692 - RR42_RS00865 0.81 +0.5 209,692 - RR42_RS00865 0.81 -1.1 209,692 - RR42_RS00865 0.81 -0.8 209,692 - RR42_RS00865 0.81 +0.3 209,692 - RR42_RS00865 0.81 +1.1 209,692 - RR42_RS00865 0.81 +0.2 209,692 - RR42_RS00865 0.81 -1.0 209,692 - RR42_RS00865 0.81 -0.1 209,692 - RR42_RS00865 0.81 +0.2 209,693 + RR42_RS00865 0.82 -1.0 209,693 + RR42_RS00865 0.82 -1.0 209,693 + RR42_RS00865 0.82 -1.1 209,693 + RR42_RS00865 0.82 -2.1 209,694 - RR42_RS00865 0.82 +0.6 209,694 - RR42_RS00865 0.82 +1.8 209,694 - RR42_RS00865 0.82 -0.3 209,695 + RR42_RS00865 0.82 -0.5 209,695 + RR42_RS00865 0.82 -0.7 209,695 + RR42_RS00865 0.82 -0.3 209,695 + RR42_RS00865 0.82 -3.3 209,696 - RR42_RS00865 0.82 -0.3 209,696 - RR42_RS00865 0.82 +0.2 209,696 - RR42_RS00865 0.82 +0.5 209,764 - +1.2 209,801 + -1.8 209,802 - +0.2 209,802 - -0.6 209,802 - -0.1 209,901 + +0.0 209,901 + -0.2 209,901 + -0.7 209,901 + -0.2 209,901 + +0.2 209,902 - +0.5 209,902 - -0.9 209,902 - -1.4 209,902 - -1.6 209,902 - +0.6 209,902 - +1.2 209,902 - -1.1
Or see this region's nucleotide sequence