Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14925

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14920 and HSERO_RS14925 are separated by 466 nucleotidesHSERO_RS14925 and HSERO_RS14930 are separated by 93 nucleotides HSERO_RS14920: HSERO_RS14920 - GntR family transcriptional regulator, at 3,388,361 to 3,389,146 _RS14920 HSERO_RS14925: HSERO_RS14925 - malate dehydrogenase, at 3,389,613 to 3,390,602 _RS14925 HSERO_RS14930: HSERO_RS14930 - aldolase, at 3,390,696 to 3,391,697 _RS14930 Position (kb) 3389 3390 3391Strain fitness (log2 ratio) -3 -2 -1 0 1at 3389.062 kb on + strand, within HSERO_RS14920at 3389.354 kb on - strandat 3389.457 kb on - strandat 3389.502 kb on + strandat 3389.538 kb on + strandat 3391.341 kb on - strand, within HSERO_RS14930at 3391.514 kb on + strand, within HSERO_RS14930at 3391.528 kb on - strand, within HSERO_RS14930

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,389,062 + HSERO_RS14920 0.89 -3.7
3,389,354 - +0.1
3,389,457 - -0.4
3,389,502 + -1.1
3,389,538 + +0.8
3,391,341 - HSERO_RS14930 0.64 -1.6
3,391,514 + HSERO_RS14930 0.82 -0.2
3,391,528 - HSERO_RS14930 0.83 -1.6

Or see this region's nucleotide sequence