Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14655

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14650 and HSERO_RS14655 are separated by 20 nucleotidesHSERO_RS14655 and HSERO_RS14660 are separated by 32 nucleotidesHSERO_RS14660 and HSERO_RS14665 overlap by 17 nucleotides HSERO_RS14650: HSERO_RS14650 - porphyrin biosynthesis protein, at 3,318,236 to 3,319,435 _RS14650 HSERO_RS14655: HSERO_RS14655 - uroporphyrin-III C-methyltransferase, at 3,319,456 to 3,320,661 _RS14655 HSERO_RS14660: HSERO_RS14660 - uroporphyrinogen III synthase, at 3,320,694 to 3,321,503 _RS14660 HSERO_RS14665: HSERO_RS14665 - porphobilinogen deaminase, at 3,321,487 to 3,322,443 _RS14665 Position (kb) 3319 3320 3321Strain fitness (log2 ratio) -3 -2 -1 0 1at 3319.492 kb on - strandat 3319.706 kb on + strand, within HSERO_RS14655at 3320.476 kb on - strand, within HSERO_RS14655at 3320.748 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,319,492 - -2.1
3,319,706 + HSERO_RS14655 0.21 -0.1
3,320,476 - HSERO_RS14655 0.85 -1.6
3,320,748 + -3.0

Or see this region's nucleotide sequence