Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24555 and CA265_RS24560 are separated by 37 nucleotides CA265_RS24560 and CA265_RS24565 are separated by 66 nucleotides
CA265_RS24555: CA265_RS24555 - ATP/GTP-binding protein, at 5,982,528 to 5,983,637
_RS24555
CA265_RS24560: CA265_RS24560 - DUF5007 domain-containing protein, at 5,983,675 to 5,984,763
_RS24560
CA265_RS24565: CA265_RS24565 - SusC/RagA family TonB-linked outer membrane protein, at 5,984,830 to 5,987,934
_RS24565
Position (kb) 5983
5984
5985 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5982.749 kb on + strand, within CA265_RS24555 at 5982.749 kb on + strand, within CA265_RS24555 at 5982.865 kb on + strand, within CA265_RS24555 at 5982.892 kb on - strand, within CA265_RS24555 at 5982.945 kb on - strand, within CA265_RS24555 at 5982.959 kb on + strand, within CA265_RS24555 at 5982.964 kb on + strand, within CA265_RS24555 at 5982.965 kb on - strand, within CA265_RS24555 at 5983.082 kb on + strand, within CA265_RS24555 at 5983.230 kb on - strand, within CA265_RS24555 at 5983.268 kb on + strand, within CA265_RS24555 at 5983.311 kb on - strand, within CA265_RS24555 at 5983.356 kb on - strand, within CA265_RS24555 at 5983.394 kb on - strand, within CA265_RS24555 at 5983.441 kb on - strand, within CA265_RS24555 at 5983.463 kb on - strand, within CA265_RS24555 at 5983.463 kb on - strand, within CA265_RS24555 at 5983.552 kb on - strand at 5983.674 kb on + strand at 5983.751 kb on - strand at 5983.783 kb on - strand at 5983.808 kb on + strand, within CA265_RS24560 at 5983.892 kb on + strand, within CA265_RS24560 at 5983.893 kb on - strand, within CA265_RS24560 at 5983.951 kb on + strand, within CA265_RS24560 at 5983.951 kb on + strand, within CA265_RS24560 at 5983.951 kb on + strand, within CA265_RS24560 at 5984.000 kb on + strand, within CA265_RS24560 at 5984.024 kb on + strand, within CA265_RS24560 at 5984.025 kb on - strand, within CA265_RS24560 at 5984.062 kb on - strand, within CA265_RS24560 at 5984.112 kb on + strand, within CA265_RS24560 at 5984.112 kb on + strand, within CA265_RS24560 at 5984.113 kb on - strand, within CA265_RS24560 at 5984.163 kb on + strand, within CA265_RS24560 at 5984.222 kb on - strand, within CA265_RS24560 at 5984.242 kb on - strand, within CA265_RS24560 at 5984.364 kb on + strand, within CA265_RS24560 at 5984.384 kb on + strand, within CA265_RS24560 at 5984.391 kb on - strand, within CA265_RS24560 at 5984.392 kb on + strand, within CA265_RS24560 at 5984.392 kb on + strand, within CA265_RS24560 at 5984.393 kb on - strand, within CA265_RS24560 at 5984.393 kb on - strand, within CA265_RS24560 at 5984.394 kb on + strand, within CA265_RS24560 at 5984.395 kb on - strand at 5984.436 kb on + strand, within CA265_RS24560 at 5984.448 kb on + strand, within CA265_RS24560 at 5984.549 kb on - strand, within CA265_RS24560 at 5984.695 kb on + strand at 5984.778 kb on + strand at 5984.782 kb on - strand at 5984.813 kb on + strand at 5984.828 kb on + strand at 5984.828 kb on + strand at 5984.829 kb on - strand at 5984.922 kb on - strand at 5984.988 kb on + strand at 5984.988 kb on + strand at 5985.011 kb on + strand at 5985.012 kb on - strand at 5985.012 kb on - strand at 5985.012 kb on - strand at 5985.031 kb on + strand at 5985.036 kb on + strand at 5985.037 kb on - strand at 5985.067 kb on - strand at 5985.067 kb on - strand at 5985.153 kb on + strand, within CA265_RS24565 at 5985.154 kb on - strand, within CA265_RS24565 at 5985.154 kb on - strand, within CA265_RS24565 at 5985.224 kb on + strand, within CA265_RS24565 at 5985.314 kb on + strand, within CA265_RS24565 at 5985.369 kb on + strand, within CA265_RS24565 at 5985.370 kb on - strand, within CA265_RS24565 at 5985.373 kb on - strand, within CA265_RS24565 at 5985.389 kb on + strand, within CA265_RS24565 at 5985.471 kb on + strand, within CA265_RS24565 at 5985.473 kb on + strand, within CA265_RS24565 at 5985.517 kb on + strand, within CA265_RS24565 at 5985.546 kb on + strand, within CA265_RS24565 at 5985.593 kb on - strand, within CA265_RS24565 at 5985.593 kb on - strand, within CA265_RS24565 at 5985.593 kb on - strand, within CA265_RS24565 at 5985.681 kb on + strand, within CA265_RS24565 at 5985.682 kb on - strand, within CA265_RS24565 at 5985.758 kb on - strand, within CA265_RS24565
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,982,749 + CA265_RS24555 0.20 +0.2 5,982,749 + CA265_RS24555 0.20 +0.6 5,982,865 + CA265_RS24555 0.30 +1.0 5,982,892 - CA265_RS24555 0.33 +2.1 5,982,945 - CA265_RS24555 0.38 +0.2 5,982,959 + CA265_RS24555 0.39 +0.2 5,982,964 + CA265_RS24555 0.39 +0.0 5,982,965 - CA265_RS24555 0.39 +1.4 5,983,082 + CA265_RS24555 0.50 +0.9 5,983,230 - CA265_RS24555 0.63 -0.3 5,983,268 + CA265_RS24555 0.67 -0.0 5,983,311 - CA265_RS24555 0.71 +0.6 5,983,356 - CA265_RS24555 0.75 +0.0 5,983,394 - CA265_RS24555 0.78 -0.9 5,983,441 - CA265_RS24555 0.82 +0.9 5,983,463 - CA265_RS24555 0.84 -0.0 5,983,463 - CA265_RS24555 0.84 +0.8 5,983,552 - -0.2 5,983,674 + +0.5 5,983,751 - -0.5 5,983,783 - -0.2 5,983,808 + CA265_RS24560 0.12 +0.8 5,983,892 + CA265_RS24560 0.20 +0.8 5,983,893 - CA265_RS24560 0.20 +1.1 5,983,951 + CA265_RS24560 0.25 +0.5 5,983,951 + CA265_RS24560 0.25 -0.0 5,983,951 + CA265_RS24560 0.25 +1.2 5,984,000 + CA265_RS24560 0.30 +1.0 5,984,024 + CA265_RS24560 0.32 +0.0 5,984,025 - CA265_RS24560 0.32 +1.6 5,984,062 - CA265_RS24560 0.36 +0.1 5,984,112 + CA265_RS24560 0.40 +0.6 5,984,112 + CA265_RS24560 0.40 +0.4 5,984,113 - CA265_RS24560 0.40 -1.4 5,984,163 + CA265_RS24560 0.45 +0.5 5,984,222 - CA265_RS24560 0.50 +0.2 5,984,242 - CA265_RS24560 0.52 +0.6 5,984,364 + CA265_RS24560 0.63 +0.7 5,984,384 + CA265_RS24560 0.65 +1.1 5,984,391 - CA265_RS24560 0.66 +0.5 5,984,392 + CA265_RS24560 0.66 -1.8 5,984,392 + CA265_RS24560 0.66 +0.4 5,984,393 - CA265_RS24560 0.66 +0.5 5,984,393 - CA265_RS24560 0.66 +0.8 5,984,394 + CA265_RS24560 0.66 +0.0 5,984,395 - +3.1 5,984,436 + CA265_RS24560 0.70 +0.4 5,984,448 + CA265_RS24560 0.71 -0.0 5,984,549 - CA265_RS24560 0.80 +1.1 5,984,695 + +1.9 5,984,778 + +1.4 5,984,782 - +0.6 5,984,813 + +1.4 5,984,828 + -2.0 5,984,828 + +0.1 5,984,829 - +0.9 5,984,922 - -0.0 5,984,988 + +0.1 5,984,988 + +0.2 5,985,011 + +2.1 5,985,012 - -0.1 5,985,012 - -0.2 5,985,012 - +0.2 5,985,031 + +0.1 5,985,036 + -1.0 5,985,037 - +0.4 5,985,067 - -0.4 5,985,067 - +0.2 5,985,153 + CA265_RS24565 0.10 +0.0 5,985,154 - CA265_RS24565 0.10 -1.2 5,985,154 - CA265_RS24565 0.10 +1.1 5,985,224 + CA265_RS24565 0.13 -0.2 5,985,314 + CA265_RS24565 0.16 -2.7 5,985,369 + CA265_RS24565 0.17 +0.4 5,985,370 - CA265_RS24565 0.17 -0.5 5,985,373 - CA265_RS24565 0.17 +0.0 5,985,389 + CA265_RS24565 0.18 -0.2 5,985,471 + CA265_RS24565 0.21 -0.1 5,985,473 + CA265_RS24565 0.21 +0.5 5,985,517 + CA265_RS24565 0.22 +0.2 5,985,546 + CA265_RS24565 0.23 -0.3 5,985,593 - CA265_RS24565 0.25 -0.5 5,985,593 - CA265_RS24565 0.25 +0.6 5,985,593 - CA265_RS24565 0.25 +0.0 5,985,681 + CA265_RS24565 0.27 +0.3 5,985,682 - CA265_RS24565 0.27 +0.5 5,985,758 - CA265_RS24565 0.30 -1.2
Or see this region's nucleotide sequence