Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23475 and CA265_RS23480 are separated by 646 nucleotides CA265_RS23480 and CA265_RS23485 are separated by 85 nucleotides CA265_RS23485 and CA265_RS23490 are separated by 308 nucleotides
CA265_RS23475: CA265_RS23475 - aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) <small>(from data)</small>, at 5,741,803 to 5,744,256
_RS23475
CA265_RS23480: CA265_RS23480 - hypothetical protein, at 5,744,903 to 5,745,097
_RS23480
CA265_RS23485: CA265_RS23485 - hypothetical protein, at 5,745,183 to 5,745,416
_RS23485
CA265_RS23490: CA265_RS23490 - phosphoenolpyruvate carboxykinase (ATP), at 5,745,725 to 5,747,323
_RS23490
Position (kb) 5744
5745
5746 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5743.952 kb on - strand, within CA265_RS23475 at 5743.952 kb on - strand, within CA265_RS23475 at 5744.078 kb on + strand at 5744.119 kb on + strand at 5744.149 kb on + strand at 5744.155 kb on + strand at 5744.205 kb on + strand at 5744.224 kb on + strand at 5744.249 kb on - strand at 5744.262 kb on + strand at 5744.296 kb on + strand at 5744.296 kb on + strand at 5744.405 kb on + strand at 5744.447 kb on - strand at 5744.458 kb on + strand at 5744.493 kb on - strand at 5744.592 kb on - strand at 5744.659 kb on - strand at 5744.727 kb on + strand at 5744.815 kb on + strand at 5744.921 kb on + strand at 5744.944 kb on + strand, within CA265_RS23480 at 5744.992 kb on + strand, within CA265_RS23480 at 5744.992 kb on + strand, within CA265_RS23480 at 5744.993 kb on - strand, within CA265_RS23480 at 5745.001 kb on + strand, within CA265_RS23480 at 5745.038 kb on - strand, within CA265_RS23480 at 5745.039 kb on + strand, within CA265_RS23480 at 5745.040 kb on - strand, within CA265_RS23480 at 5745.120 kb on - strand at 5745.120 kb on - strand at 5745.120 kb on - strand at 5745.122 kb on - strand at 5745.122 kb on - strand at 5745.143 kb on + strand at 5745.181 kb on + strand at 5745.184 kb on + strand at 5745.286 kb on + strand, within CA265_RS23485 at 5745.291 kb on - strand, within CA265_RS23485 at 5745.346 kb on + strand, within CA265_RS23485 at 5745.374 kb on - strand, within CA265_RS23485 at 5745.376 kb on + strand, within CA265_RS23485 at 5745.377 kb on - strand, within CA265_RS23485 at 5745.393 kb on + strand at 5745.647 kb on - strand at 5745.709 kb on + strand at 5745.713 kb on + strand at 5745.757 kb on - strand at 5745.790 kb on - strand at 5745.801 kb on + strand at 5745.802 kb on - strand at 5745.802 kb on - strand at 5745.831 kb on + strand at 5745.835 kb on - strand at 5745.919 kb on + strand, within CA265_RS23490 at 5745.920 kb on - strand, within CA265_RS23490 at 5745.924 kb on + strand, within CA265_RS23490 at 5745.925 kb on - strand, within CA265_RS23490 at 5745.925 kb on - strand, within CA265_RS23490 at 5745.936 kb on + strand, within CA265_RS23490 at 5745.973 kb on + strand, within CA265_RS23490 at 5745.973 kb on + strand, within CA265_RS23490 at 5746.010 kb on - strand, within CA265_RS23490 at 5746.086 kb on + strand, within CA265_RS23490
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,743,952 - CA265_RS23475 0.88 -2.7 5,743,952 - CA265_RS23475 0.88 -2.5 5,744,078 + -3.1 5,744,119 + -0.9 5,744,149 + -4.7 5,744,155 + -1.9 5,744,205 + -1.3 5,744,224 + -1.1 5,744,249 - -1.9 5,744,262 + -1.6 5,744,296 + -2.6 5,744,296 + -0.6 5,744,405 + -2.7 5,744,447 - +0.9 5,744,458 + -3.3 5,744,493 - -0.2 5,744,592 - -1.5 5,744,659 - -0.3 5,744,727 + +0.6 5,744,815 + -0.3 5,744,921 + -1.3 5,744,944 + CA265_RS23480 0.21 +0.9 5,744,992 + CA265_RS23480 0.46 +0.9 5,744,992 + CA265_RS23480 0.46 +1.1 5,744,993 - CA265_RS23480 0.46 -0.9 5,745,001 + CA265_RS23480 0.50 +1.4 5,745,038 - CA265_RS23480 0.69 +0.3 5,745,039 + CA265_RS23480 0.70 +1.2 5,745,040 - CA265_RS23480 0.70 +0.9 5,745,120 - +0.4 5,745,120 - +0.3 5,745,120 - +0.3 5,745,122 - +0.4 5,745,122 - +0.6 5,745,143 + +1.2 5,745,181 + +1.1 5,745,184 + +1.1 5,745,286 + CA265_RS23485 0.44 +0.3 5,745,291 - CA265_RS23485 0.46 +0.3 5,745,346 + CA265_RS23485 0.70 -2.4 5,745,374 - CA265_RS23485 0.82 +0.1 5,745,376 + CA265_RS23485 0.82 -0.9 5,745,377 - CA265_RS23485 0.83 +0.8 5,745,393 + +0.3 5,745,647 - -0.6 5,745,709 + +0.3 5,745,713 + +0.4 5,745,757 - +2.0 5,745,790 - +0.4 5,745,801 + +0.4 5,745,802 - +0.3 5,745,802 - +0.2 5,745,831 + -0.7 5,745,835 - -0.1 5,745,919 + CA265_RS23490 0.12 +0.3 5,745,920 - CA265_RS23490 0.12 +0.2 5,745,924 + CA265_RS23490 0.12 -0.1 5,745,925 - CA265_RS23490 0.13 +0.1 5,745,925 - CA265_RS23490 0.13 +0.1 5,745,936 + CA265_RS23490 0.13 +0.9 5,745,973 + CA265_RS23490 0.16 +0.7 5,745,973 + CA265_RS23490 0.16 -0.3 5,746,010 - CA265_RS23490 0.18 -1.0 5,746,086 + CA265_RS23490 0.23 +0.5
Or see this region's nucleotide sequence