Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22645 and CA265_RS22650 are separated by 146 nucleotides CA265_RS22650 and CA265_RS22655 are separated by 134 nucleotides CA265_RS22655 and CA265_RS22660 are separated by 323 nucleotides
CA265_RS22645: CA265_RS22645 - tryptophan 2,3-dioxygenase, at 5,545,208 to 5,546,173
_RS22645
CA265_RS22650: CA265_RS22650 - branched chain amino acid aminotransferase, at 5,546,320 to 5,547,384
_RS22650
CA265_RS22655: CA265_RS22655 - hypothetical protein, at 5,547,519 to 5,547,983
_RS22655
CA265_RS22660: CA265_RS22660 - DNA repair protein RadA, at 5,548,307 to 5,549,683
_RS22660
Position (kb) 5546
5547
5548 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5545.326 kb on - strand, within CA265_RS22645 at 5545.334 kb on + strand, within CA265_RS22645 at 5545.335 kb on - strand, within CA265_RS22645 at 5545.409 kb on + strand, within CA265_RS22645 at 5545.410 kb on - strand, within CA265_RS22645 at 5545.436 kb on - strand, within CA265_RS22645 at 5545.539 kb on + strand, within CA265_RS22645 at 5545.609 kb on - strand, within CA265_RS22645 at 5545.672 kb on + strand, within CA265_RS22645 at 5545.707 kb on + strand, within CA265_RS22645 at 5545.707 kb on + strand, within CA265_RS22645 at 5545.722 kb on + strand, within CA265_RS22645 at 5545.722 kb on + strand, within CA265_RS22645 at 5545.723 kb on - strand, within CA265_RS22645 at 5545.723 kb on - strand, within CA265_RS22645 at 5545.742 kb on - strand, within CA265_RS22645 at 5545.877 kb on + strand, within CA265_RS22645 at 5545.877 kb on + strand, within CA265_RS22645 at 5545.878 kb on - strand, within CA265_RS22645 at 5545.946 kb on + strand, within CA265_RS22645 at 5545.951 kb on - strand, within CA265_RS22645 at 5545.990 kb on - strand, within CA265_RS22645 at 5546.017 kb on + strand, within CA265_RS22645 at 5546.017 kb on + strand, within CA265_RS22645 at 5546.146 kb on - strand at 5546.150 kb on - strand at 5546.298 kb on - strand at 5546.314 kb on - strand at 5546.339 kb on + strand at 5546.544 kb on - strand, within CA265_RS22650 at 5546.552 kb on - strand, within CA265_RS22650 at 5546.575 kb on - strand, within CA265_RS22650 at 5546.662 kb on - strand, within CA265_RS22650 at 5546.723 kb on - strand, within CA265_RS22650 at 5546.729 kb on + strand, within CA265_RS22650 at 5546.731 kb on + strand, within CA265_RS22650 at 5546.732 kb on - strand, within CA265_RS22650 at 5546.732 kb on - strand, within CA265_RS22650 at 5546.805 kb on - strand, within CA265_RS22650 at 5546.831 kb on - strand, within CA265_RS22650 at 5546.831 kb on - strand, within CA265_RS22650 at 5546.914 kb on - strand, within CA265_RS22650 at 5546.930 kb on + strand, within CA265_RS22650 at 5546.931 kb on - strand, within CA265_RS22650 at 5547.004 kb on - strand, within CA265_RS22650 at 5547.103 kb on - strand, within CA265_RS22650 at 5547.135 kb on - strand, within CA265_RS22650 at 5547.151 kb on - strand, within CA265_RS22650 at 5547.301 kb on - strand at 5547.301 kb on - strand at 5547.301 kb on - strand at 5547.380 kb on + strand at 5547.380 kb on + strand at 5547.381 kb on - strand at 5547.382 kb on + strand at 5547.420 kb on + strand at 5547.421 kb on - strand at 5547.477 kb on + strand at 5547.520 kb on + strand at 5547.693 kb on + strand, within CA265_RS22655 at 5547.693 kb on + strand, within CA265_RS22655 at 5547.693 kb on + strand, within CA265_RS22655 at 5547.694 kb on - strand, within CA265_RS22655 at 5547.762 kb on + strand, within CA265_RS22655 at 5547.913 kb on + strand, within CA265_RS22655 at 5547.914 kb on + strand, within CA265_RS22655 at 5547.914 kb on + strand, within CA265_RS22655 at 5547.915 kb on - strand, within CA265_RS22655 at 5547.990 kb on - strand at 5548.092 kb on - strand at 5548.093 kb on + strand at 5548.305 kb on - strand at 5548.305 kb on - strand at 5548.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,545,326 - CA265_RS22645 0.12 +0.0 5,545,334 + CA265_RS22645 0.13 -0.6 5,545,335 - CA265_RS22645 0.13 -0.0 5,545,409 + CA265_RS22645 0.21 +0.5 5,545,410 - CA265_RS22645 0.21 -1.5 5,545,436 - CA265_RS22645 0.24 -0.3 5,545,539 + CA265_RS22645 0.34 -1.5 5,545,609 - CA265_RS22645 0.42 +0.2 5,545,672 + CA265_RS22645 0.48 +0.5 5,545,707 + CA265_RS22645 0.52 -2.4 5,545,707 + CA265_RS22645 0.52 +1.4 5,545,722 + CA265_RS22645 0.53 -0.5 5,545,722 + CA265_RS22645 0.53 -0.0 5,545,723 - CA265_RS22645 0.53 +0.1 5,545,723 - CA265_RS22645 0.53 -0.5 5,545,742 - CA265_RS22645 0.55 -0.0 5,545,877 + CA265_RS22645 0.69 +1.0 5,545,877 + CA265_RS22645 0.69 -0.6 5,545,878 - CA265_RS22645 0.69 +0.4 5,545,946 + CA265_RS22645 0.76 -1.8 5,545,951 - CA265_RS22645 0.77 +0.1 5,545,990 - CA265_RS22645 0.81 +1.0 5,546,017 + CA265_RS22645 0.84 +0.2 5,546,017 + CA265_RS22645 0.84 +0.1 5,546,146 - -0.2 5,546,150 - -0.8 5,546,298 - -2.6 5,546,314 - -2.2 5,546,339 + -2.2 5,546,544 - CA265_RS22650 0.21 -1.3 5,546,552 - CA265_RS22650 0.22 -3.1 5,546,575 - CA265_RS22650 0.24 -2.6 5,546,662 - CA265_RS22650 0.32 -1.3 5,546,723 - CA265_RS22650 0.38 +0.0 5,546,729 + CA265_RS22650 0.38 -1.3 5,546,731 + CA265_RS22650 0.39 -1.9 5,546,732 - CA265_RS22650 0.39 -1.6 5,546,732 - CA265_RS22650 0.39 -1.2 5,546,805 - CA265_RS22650 0.46 -1.2 5,546,831 - CA265_RS22650 0.48 -1.0 5,546,831 - CA265_RS22650 0.48 -3.6 5,546,914 - CA265_RS22650 0.56 +0.0 5,546,930 + CA265_RS22650 0.57 -1.6 5,546,931 - CA265_RS22650 0.57 -2.9 5,547,004 - CA265_RS22650 0.64 -4.2 5,547,103 - CA265_RS22650 0.74 -1.5 5,547,135 - CA265_RS22650 0.77 -1.7 5,547,151 - CA265_RS22650 0.78 -3.6 5,547,301 - -1.6 5,547,301 - -2.9 5,547,301 - -1.1 5,547,380 + -1.2 5,547,380 + -1.0 5,547,381 - -1.3 5,547,382 + -0.6 5,547,420 + +0.4 5,547,421 - -0.3 5,547,477 + -0.8 5,547,520 + +0.2 5,547,693 + CA265_RS22655 0.37 +0.8 5,547,693 + CA265_RS22655 0.37 -0.1 5,547,693 + CA265_RS22655 0.37 +0.5 5,547,694 - CA265_RS22655 0.38 -1.1 5,547,762 + CA265_RS22655 0.52 +0.1 5,547,913 + CA265_RS22655 0.85 +1.9 5,547,914 + CA265_RS22655 0.85 +0.2 5,547,914 + CA265_RS22655 0.85 -0.5 5,547,915 - CA265_RS22655 0.85 +0.4 5,547,990 - -2.9 5,548,092 - +0.4 5,548,093 + -0.8 5,548,305 - +3.9 5,548,305 - -0.6 5,548,308 + -0.5
Or see this region's nucleotide sequence