Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21735 and CA265_RS21740 are separated by 113 nucleotides CA265_RS21740 and CA265_RS21745 are separated by 46 nucleotides CA265_RS21745 and CA265_RS21750 are separated by 460 nucleotides CA265_RS21750 and CA265_RS21755 are separated by 5 nucleotides CA265_RS21755 and CA265_RS21760 are separated by 4 nucleotides
CA265_RS21735: CA265_RS21735 - hypothetical protein, at 5,344,803 to 5,345,744
_RS21735
CA265_RS21740: CA265_RS21740 - RNA polymerase sigma factor, at 5,345,858 to 5,346,409
_RS21740
CA265_RS21745: CA265_RS21745 - hypothetical protein, at 5,346,456 to 5,346,770
_RS21745
CA265_RS21750: CA265_RS21750 - hypothetical protein, at 5,347,231 to 5,347,497
_RS21750
CA265_RS21755: CA265_RS21755 - hypothetical protein, at 5,347,503 to 5,347,736
_RS21755
CA265_RS21760: CA265_RS21760 - hypothetical protein, at 5,347,741 to 5,348,133
_RS21760
Position (kb) 5346
5347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5345.524 kb on + strand, within CA265_RS21735 at 5345.562 kb on - strand, within CA265_RS21735 at 5345.655 kb on + strand at 5345.656 kb on - strand at 5345.663 kb on - strand at 5345.700 kb on + strand at 5345.701 kb on - strand at 5345.706 kb on - strand at 5345.814 kb on - strand at 5345.909 kb on - strand at 5346.153 kb on + strand, within CA265_RS21740 at 5346.198 kb on + strand, within CA265_RS21740 at 5346.199 kb on - strand, within CA265_RS21740 at 5346.199 kb on - strand, within CA265_RS21740 at 5346.251 kb on + strand, within CA265_RS21740 at 5346.252 kb on - strand, within CA265_RS21740 at 5346.252 kb on - strand, within CA265_RS21740 at 5346.252 kb on - strand, within CA265_RS21740 at 5346.255 kb on + strand, within CA265_RS21740 at 5346.283 kb on + strand, within CA265_RS21740 at 5346.320 kb on - strand, within CA265_RS21740 at 5346.320 kb on - strand, within CA265_RS21740 at 5346.330 kb on + strand, within CA265_RS21740 at 5346.331 kb on - strand, within CA265_RS21740 at 5346.400 kb on + strand at 5346.401 kb on - strand at 5346.404 kb on + strand at 5346.482 kb on + strand at 5346.506 kb on - strand, within CA265_RS21745 at 5346.506 kb on - strand, within CA265_RS21745 at 5346.509 kb on + strand, within CA265_RS21745 at 5346.509 kb on + strand, within CA265_RS21745 at 5346.560 kb on + strand, within CA265_RS21745 at 5346.601 kb on + strand, within CA265_RS21745 at 5346.602 kb on - strand, within CA265_RS21745 at 5346.602 kb on - strand, within CA265_RS21745 at 5346.893 kb on - strand at 5346.893 kb on - strand at 5347.009 kb on + strand at 5347.009 kb on + strand at 5347.010 kb on - strand at 5347.010 kb on - strand at 5347.010 kb on - strand at 5347.013 kb on + strand at 5347.019 kb on - strand at 5347.155 kb on - strand at 5347.208 kb on - strand at 5347.268 kb on + strand, within CA265_RS21750 at 5347.311 kb on + strand, within CA265_RS21750 at 5347.372 kb on + strand, within CA265_RS21750 at 5347.409 kb on - strand, within CA265_RS21750 at 5347.410 kb on + strand, within CA265_RS21750 at 5347.479 kb on + strand at 5347.482 kb on + strand at 5347.482 kb on + strand at 5347.487 kb on + strand at 5347.487 kb on + strand at 5347.519 kb on + strand at 5347.520 kb on - strand at 5347.562 kb on - strand, within CA265_RS21755 at 5347.601 kb on - strand, within CA265_RS21755 at 5347.620 kb on + strand, within CA265_RS21755 at 5347.650 kb on - strand, within CA265_RS21755 at 5347.663 kb on - strand, within CA265_RS21755 at 5347.701 kb on - strand, within CA265_RS21755 at 5347.718 kb on - strand at 5347.741 kb on - strand at 5347.741 kb on - strand at 5347.741 kb on - strand at 5347.741 kb on - strand at 5347.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,345,524 + CA265_RS21735 0.77 -0.8 5,345,562 - CA265_RS21735 0.81 -0.3 5,345,655 + -0.8 5,345,656 - -1.1 5,345,663 - -1.5 5,345,700 + -0.5 5,345,701 - -0.3 5,345,706 - -0.5 5,345,814 - +0.5 5,345,909 - +0.2 5,346,153 + CA265_RS21740 0.53 -0.3 5,346,198 + CA265_RS21740 0.62 +0.2 5,346,199 - CA265_RS21740 0.62 +0.8 5,346,199 - CA265_RS21740 0.62 -0.0 5,346,251 + CA265_RS21740 0.71 -0.8 5,346,252 - CA265_RS21740 0.71 +0.7 5,346,252 - CA265_RS21740 0.71 -1.4 5,346,252 - CA265_RS21740 0.71 +0.3 5,346,255 + CA265_RS21740 0.72 -0.1 5,346,283 + CA265_RS21740 0.77 +0.1 5,346,320 - CA265_RS21740 0.84 +0.8 5,346,320 - CA265_RS21740 0.84 +0.7 5,346,330 + CA265_RS21740 0.86 -1.0 5,346,331 - CA265_RS21740 0.86 +0.7 5,346,400 + -0.3 5,346,401 - +1.3 5,346,404 + +2.3 5,346,482 + -1.4 5,346,506 - CA265_RS21745 0.16 +0.9 5,346,506 - CA265_RS21745 0.16 +0.3 5,346,509 + CA265_RS21745 0.17 -1.6 5,346,509 + CA265_RS21745 0.17 -0.3 5,346,560 + CA265_RS21745 0.33 -2.7 5,346,601 + CA265_RS21745 0.46 -3.4 5,346,602 - CA265_RS21745 0.46 -0.1 5,346,602 - CA265_RS21745 0.46 -0.3 5,346,893 - -1.1 5,346,893 - -0.6 5,347,009 + -2.7 5,347,009 + -1.4 5,347,010 - +0.7 5,347,010 - -0.1 5,347,010 - +1.3 5,347,013 + -0.8 5,347,019 - +0.2 5,347,155 - +0.3 5,347,208 - +0.3 5,347,268 + CA265_RS21750 0.14 -0.6 5,347,311 + CA265_RS21750 0.30 -1.5 5,347,372 + CA265_RS21750 0.53 -0.3 5,347,409 - CA265_RS21750 0.67 -1.6 5,347,410 + CA265_RS21750 0.67 -2.5 5,347,479 + +0.1 5,347,482 + +0.2 5,347,482 + -0.7 5,347,487 + -1.1 5,347,487 + -1.6 5,347,519 + -0.3 5,347,520 - +0.5 5,347,562 - CA265_RS21755 0.25 +0.2 5,347,601 - CA265_RS21755 0.42 -0.7 5,347,620 + CA265_RS21755 0.50 -0.9 5,347,650 - CA265_RS21755 0.63 -0.2 5,347,663 - CA265_RS21755 0.68 -0.5 5,347,701 - CA265_RS21755 0.85 -1.1 5,347,718 - -0.6 5,347,741 - +0.1 5,347,741 - -0.4 5,347,741 - +2.3 5,347,741 - +0.5 5,347,761 - -0.4
Or see this region's nucleotide sequence