Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21255

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21250 and CA265_RS21255 are separated by 54 nucleotidesCA265_RS21255 and CA265_RS21260 overlap by 41 nucleotides CA265_RS21250: CA265_RS21250 - thioredoxin, at 5,237,214 to 5,238,593 _RS21250 CA265_RS21255: CA265_RS21255 - hypothetical protein, at 5,238,648 to 5,239,829 _RS21255 CA265_RS21260: CA265_RS21260 - hypothetical protein, at 5,239,789 to 5,241,345 _RS21260 Position (kb) 5238 5239 5240Strain fitness (log2 ratio) -2 -1 0 1 2at 5237.769 kb on - strand, within CA265_RS21250at 5237.772 kb on + strand, within CA265_RS21250at 5237.773 kb on - strand, within CA265_RS21250at 5237.792 kb on + strand, within CA265_RS21250at 5237.793 kb on - strand, within CA265_RS21250at 5237.827 kb on - strand, within CA265_RS21250at 5237.887 kb on - strand, within CA265_RS21250at 5237.931 kb on + strand, within CA265_RS21250at 5237.936 kb on + strand, within CA265_RS21250at 5237.959 kb on - strand, within CA265_RS21250at 5237.998 kb on - strand, within CA265_RS21250at 5237.998 kb on - strand, within CA265_RS21250at 5238.062 kb on - strand, within CA265_RS21250at 5238.062 kb on - strand, within CA265_RS21250at 5238.080 kb on - strand, within CA265_RS21250at 5238.090 kb on + strand, within CA265_RS21250at 5238.099 kb on + strand, within CA265_RS21250at 5238.100 kb on - strand, within CA265_RS21250at 5238.129 kb on - strand, within CA265_RS21250at 5238.129 kb on - strand, within CA265_RS21250at 5238.139 kb on + strand, within CA265_RS21250at 5238.139 kb on + strand, within CA265_RS21250at 5238.192 kb on + strand, within CA265_RS21250at 5238.200 kb on + strand, within CA265_RS21250at 5238.210 kb on - strand, within CA265_RS21250at 5238.219 kb on - strand, within CA265_RS21250at 5238.257 kb on + strand, within CA265_RS21250at 5238.304 kb on + strand, within CA265_RS21250at 5238.341 kb on - strand, within CA265_RS21250at 5238.425 kb on - strand, within CA265_RS21250at 5238.466 kb on - strandat 5238.476 kb on + strandat 5238.523 kb on + strandat 5238.568 kb on + strandat 5238.569 kb on - strandat 5238.591 kb on + strandat 5238.668 kb on - strandat 5238.727 kb on + strandat 5238.728 kb on - strandat 5238.728 kb on - strandat 5238.827 kb on + strand, within CA265_RS21255at 5238.915 kb on - strand, within CA265_RS21255at 5238.983 kb on + strand, within CA265_RS21255at 5239.006 kb on + strand, within CA265_RS21255at 5239.006 kb on + strand, within CA265_RS21255at 5239.019 kb on + strand, within CA265_RS21255at 5239.024 kb on + strand, within CA265_RS21255at 5239.060 kb on - strand, within CA265_RS21255at 5239.091 kb on + strand, within CA265_RS21255at 5239.096 kb on - strand, within CA265_RS21255at 5239.096 kb on - strand, within CA265_RS21255at 5239.137 kb on - strand, within CA265_RS21255at 5239.160 kb on + strand, within CA265_RS21255at 5239.160 kb on + strand, within CA265_RS21255at 5239.182 kb on - strand, within CA265_RS21255at 5239.201 kb on + strand, within CA265_RS21255at 5239.202 kb on - strand, within CA265_RS21255at 5239.275 kb on + strand, within CA265_RS21255at 5239.323 kb on + strand, within CA265_RS21255at 5239.359 kb on + strand, within CA265_RS21255at 5239.360 kb on - strand, within CA265_RS21255at 5239.376 kb on + strand, within CA265_RS21255at 5239.376 kb on + strand, within CA265_RS21255at 5239.377 kb on - strand, within CA265_RS21255at 5239.534 kb on + strand, within CA265_RS21255at 5239.536 kb on + strand, within CA265_RS21255at 5239.537 kb on - strand, within CA265_RS21255at 5239.568 kb on + strand, within CA265_RS21255at 5239.649 kb on - strand, within CA265_RS21255at 5239.653 kb on + strand, within CA265_RS21255at 5239.653 kb on + strand, within CA265_RS21255at 5239.667 kb on + strand, within CA265_RS21255at 5239.667 kb on + strand, within CA265_RS21255at 5239.668 kb on - strand, within CA265_RS21255at 5239.668 kb on - strand, within CA265_RS21255at 5239.707 kb on + strand, within CA265_RS21255at 5239.735 kb on + strandat 5239.769 kb on + strandat 5239.793 kb on + strandat 5239.963 kb on - strand, within CA265_RS21260at 5240.127 kb on - strand, within CA265_RS21260at 5240.127 kb on - strand, within CA265_RS21260at 5240.151 kb on + strand, within CA265_RS21260at 5240.167 kb on + strand, within CA265_RS21260at 5240.169 kb on + strand, within CA265_RS21260at 5240.184 kb on + strand, within CA265_RS21260at 5240.194 kb on + strand, within CA265_RS21260at 5240.194 kb on + strand, within CA265_RS21260at 5240.396 kb on + strand, within CA265_RS21260at 5240.466 kb on + strand, within CA265_RS21260at 5240.573 kb on - strand, within CA265_RS21260at 5240.596 kb on - strand, within CA265_RS21260at 5240.629 kb on + strand, within CA265_RS21260at 5240.663 kb on + strand, within CA265_RS21260at 5240.708 kb on + strand, within CA265_RS21260at 5240.708 kb on + strand, within CA265_RS21260at 5240.725 kb on - strand, within CA265_RS21260at 5240.761 kb on + strand, within CA265_RS21260at 5240.762 kb on - strand, within CA265_RS21260at 5240.804 kb on + strand, within CA265_RS21260at 5240.807 kb on + strand, within CA265_RS21260at 5240.820 kb on + strand, within CA265_RS21260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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5,237,769 - CA265_RS21250 0.40 -1.8
5,237,772 + CA265_RS21250 0.40 +0.5
5,237,773 - CA265_RS21250 0.41 +0.8
5,237,792 + CA265_RS21250 0.42 +0.5
5,237,793 - CA265_RS21250 0.42 -0.5
5,237,827 - CA265_RS21250 0.44 +0.8
5,237,887 - CA265_RS21250 0.49 +0.3
5,237,931 + CA265_RS21250 0.52 +0.1
5,237,936 + CA265_RS21250 0.52 -0.2
5,237,959 - CA265_RS21250 0.54 -0.8
5,237,998 - CA265_RS21250 0.57 +1.1
5,237,998 - CA265_RS21250 0.57 -0.4
5,238,062 - CA265_RS21250 0.61 -0.1
5,238,062 - CA265_RS21250 0.61 -0.7
5,238,080 - CA265_RS21250 0.63 -2.4
5,238,090 + CA265_RS21250 0.63 +0.1
5,238,099 + CA265_RS21250 0.64 +0.2
5,238,100 - CA265_RS21250 0.64 -0.1
5,238,129 - CA265_RS21250 0.66 +0.2
5,238,129 - CA265_RS21250 0.66 +0.6
5,238,139 + CA265_RS21250 0.67 +0.5
5,238,139 + CA265_RS21250 0.67 +0.4
5,238,192 + CA265_RS21250 0.71 +0.3
5,238,200 + CA265_RS21250 0.71 -0.3
5,238,210 - CA265_RS21250 0.72 +0.1
5,238,219 - CA265_RS21250 0.73 +0.7
5,238,257 + CA265_RS21250 0.76 +1.0
5,238,304 + CA265_RS21250 0.79 +1.4
5,238,341 - CA265_RS21250 0.82 +0.2
5,238,425 - CA265_RS21250 0.88 -0.1
5,238,466 - +0.3
5,238,476 + +1.0
5,238,523 + +0.3
5,238,568 + +1.6
5,238,569 - -0.5
5,238,591 + +0.5
5,238,668 - -1.2
5,238,727 + -0.5
5,238,728 - -1.7
5,238,728 - -1.1
5,238,827 + CA265_RS21255 0.15 +1.5
5,238,915 - CA265_RS21255 0.23 +0.0
5,238,983 + CA265_RS21255 0.28 +0.4
5,239,006 + CA265_RS21255 0.30 +1.0
5,239,006 + CA265_RS21255 0.30 +0.4
5,239,019 + CA265_RS21255 0.31 +1.4
5,239,024 + CA265_RS21255 0.32 +0.4
5,239,060 - CA265_RS21255 0.35 +1.4
5,239,091 + CA265_RS21255 0.37 +0.5
5,239,096 - CA265_RS21255 0.38 +0.8
5,239,096 - CA265_RS21255 0.38 +0.8
5,239,137 - CA265_RS21255 0.41 +0.3
5,239,160 + CA265_RS21255 0.43 +0.4
5,239,160 + CA265_RS21255 0.43 +0.4
5,239,182 - CA265_RS21255 0.45 -0.1
5,239,201 + CA265_RS21255 0.47 +0.7
5,239,202 - CA265_RS21255 0.47 +0.6
5,239,275 + CA265_RS21255 0.53 -0.1
5,239,323 + CA265_RS21255 0.57 +1.9
5,239,359 + CA265_RS21255 0.60 +0.7
5,239,360 - CA265_RS21255 0.60 +1.0
5,239,376 + CA265_RS21255 0.62 +0.6
5,239,376 + CA265_RS21255 0.62 +0.4
5,239,377 - CA265_RS21255 0.62 +0.7
5,239,534 + CA265_RS21255 0.75 +0.9
5,239,536 + CA265_RS21255 0.75 +1.1
5,239,537 - CA265_RS21255 0.75 +0.0
5,239,568 + CA265_RS21255 0.78 +2.3
5,239,649 - CA265_RS21255 0.85 +1.1
5,239,653 + CA265_RS21255 0.85 +0.6
5,239,653 + CA265_RS21255 0.85 +0.8
5,239,667 + CA265_RS21255 0.86 +0.3
5,239,667 + CA265_RS21255 0.86 +1.8
5,239,668 - CA265_RS21255 0.86 -0.3
5,239,668 - CA265_RS21255 0.86 +1.2
5,239,707 + CA265_RS21255 0.90 -0.0
5,239,735 + +1.1
5,239,769 + +1.2
5,239,793 + +1.7
5,239,963 - CA265_RS21260 0.11 +0.3
5,240,127 - CA265_RS21260 0.22 -1.7
5,240,127 - CA265_RS21260 0.22 -0.8
5,240,151 + CA265_RS21260 0.23 +0.1
5,240,167 + CA265_RS21260 0.24 +1.6
5,240,169 + CA265_RS21260 0.24 +0.5
5,240,184 + CA265_RS21260 0.25 +1.0
5,240,194 + CA265_RS21260 0.26 -0.6
5,240,194 + CA265_RS21260 0.26 +0.4
5,240,396 + CA265_RS21260 0.39 -0.4
5,240,466 + CA265_RS21260 0.43 +0.4
5,240,573 - CA265_RS21260 0.50 +0.6
5,240,596 - CA265_RS21260 0.52 -0.3
5,240,629 + CA265_RS21260 0.54 +1.0
5,240,663 + CA265_RS21260 0.56 +0.3
5,240,708 + CA265_RS21260 0.59 +0.5
5,240,708 + CA265_RS21260 0.59 +0.9
5,240,725 - CA265_RS21260 0.60 -0.6
5,240,761 + CA265_RS21260 0.62 +0.4
5,240,762 - CA265_RS21260 0.62 +0.0
5,240,804 + CA265_RS21260 0.65 +0.4
5,240,807 + CA265_RS21260 0.65 +0.5
5,240,820 + CA265_RS21260 0.66 +0.8

Or see this region's nucleotide sequence