Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21080

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21075 and CA265_RS21080 are separated by 0 nucleotidesCA265_RS21080 and CA265_RS21085 are separated by 298 nucleotides CA265_RS21075: CA265_RS21075 - ATPase, at 5,192,028 to 5,193,164 _RS21075 CA265_RS21080: CA265_RS21080 - hypothetical protein, at 5,193,165 to 5,193,386 _RS21080 CA265_RS21085: CA265_RS21085 - disulfide bond formation protein DsbA, at 5,193,685 to 5,194,401 _RS21085 Position (kb) 5193 5194Strain fitness (log2 ratio) -1 0 1 2at 5192.200 kb on + strand, within CA265_RS21075at 5192.201 kb on - strand, within CA265_RS21075at 5192.206 kb on + strand, within CA265_RS21075at 5192.207 kb on - strand, within CA265_RS21075at 5192.238 kb on - strand, within CA265_RS21075at 5192.263 kb on + strand, within CA265_RS21075at 5192.270 kb on + strand, within CA265_RS21075at 5192.271 kb on - strand, within CA265_RS21075at 5192.290 kb on + strand, within CA265_RS21075at 5192.327 kb on + strand, within CA265_RS21075at 5192.421 kb on + strand, within CA265_RS21075at 5192.422 kb on - strand, within CA265_RS21075at 5192.422 kb on - strand, within CA265_RS21075at 5192.422 kb on - strand, within CA265_RS21075at 5192.422 kb on - strand, within CA265_RS21075at 5192.424 kb on + strand, within CA265_RS21075at 5192.437 kb on + strand, within CA265_RS21075at 5192.527 kb on + strand, within CA265_RS21075at 5192.610 kb on + strand, within CA265_RS21075at 5192.639 kb on - strand, within CA265_RS21075at 5192.687 kb on + strand, within CA265_RS21075at 5192.689 kb on + strand, within CA265_RS21075at 5192.720 kb on + strand, within CA265_RS21075at 5192.788 kb on - strand, within CA265_RS21075at 5192.790 kb on - strand, within CA265_RS21075at 5192.801 kb on - strand, within CA265_RS21075at 5192.805 kb on - strand, within CA265_RS21075at 5192.864 kb on - strand, within CA265_RS21075at 5192.864 kb on - strand, within CA265_RS21075at 5192.912 kb on - strand, within CA265_RS21075at 5192.940 kb on - strand, within CA265_RS21075at 5193.020 kb on - strand, within CA265_RS21075at 5193.020 kb on - strand, within CA265_RS21075at 5193.128 kb on - strandat 5193.131 kb on + strandat 5193.132 kb on - strandat 5193.155 kb on + strandat 5193.156 kb on - strandat 5193.162 kb on + strandat 5193.163 kb on - strandat 5193.222 kb on + strand, within CA265_RS21080at 5193.259 kb on - strand, within CA265_RS21080at 5193.311 kb on - strand, within CA265_RS21080at 5193.346 kb on + strand, within CA265_RS21080at 5193.352 kb on - strand, within CA265_RS21080at 5193.359 kb on - strand, within CA265_RS21080at 5193.415 kb on + strandat 5193.416 kb on - strandat 5193.463 kb on + strandat 5193.508 kb on - strandat 5193.528 kb on + strandat 5193.687 kb on - strandat 5193.837 kb on - strand, within CA265_RS21085at 5193.857 kb on + strand, within CA265_RS21085at 5193.857 kb on + strand, within CA265_RS21085at 5193.862 kb on + strand, within CA265_RS21085at 5193.893 kb on + strand, within CA265_RS21085at 5193.894 kb on - strand, within CA265_RS21085at 5193.898 kb on - strand, within CA265_RS21085at 5193.903 kb on - strand, within CA265_RS21085at 5194.068 kb on + strand, within CA265_RS21085at 5194.069 kb on - strand, within CA265_RS21085at 5194.069 kb on - strand, within CA265_RS21085at 5194.105 kb on - strand, within CA265_RS21085at 5194.123 kb on - strand, within CA265_RS21085at 5194.164 kb on + strand, within CA265_RS21085at 5194.258 kb on - strand, within CA265_RS21085

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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5,192,200 + CA265_RS21075 0.15 +1.1
5,192,201 - CA265_RS21075 0.15 -0.5
5,192,206 + CA265_RS21075 0.16 +0.2
5,192,207 - CA265_RS21075 0.16 +0.4
5,192,238 - CA265_RS21075 0.18 +1.5
5,192,263 + CA265_RS21075 0.21 -1.3
5,192,270 + CA265_RS21075 0.21 -1.4
5,192,271 - CA265_RS21075 0.21 +0.2
5,192,290 + CA265_RS21075 0.23 +0.4
5,192,327 + CA265_RS21075 0.26 -0.2
5,192,421 + CA265_RS21075 0.35 -0.1
5,192,422 - CA265_RS21075 0.35 -0.3
5,192,422 - CA265_RS21075 0.35 +0.7
5,192,422 - CA265_RS21075 0.35 +0.6
5,192,422 - CA265_RS21075 0.35 -0.3
5,192,424 + CA265_RS21075 0.35 -0.5
5,192,437 + CA265_RS21075 0.36 -0.3
5,192,527 + CA265_RS21075 0.44 +0.0
5,192,610 + CA265_RS21075 0.51 +0.2
5,192,639 - CA265_RS21075 0.54 +0.6
5,192,687 + CA265_RS21075 0.58 -0.6
5,192,689 + CA265_RS21075 0.58 +0.7
5,192,720 + CA265_RS21075 0.61 +0.3
5,192,788 - CA265_RS21075 0.67 -0.3
5,192,790 - CA265_RS21075 0.67 +0.9
5,192,801 - CA265_RS21075 0.68 +1.0
5,192,805 - CA265_RS21075 0.68 +0.7
5,192,864 - CA265_RS21075 0.74 +1.0
5,192,864 - CA265_RS21075 0.74 +0.9
5,192,912 - CA265_RS21075 0.78 +0.2
5,192,940 - CA265_RS21075 0.80 +2.1
5,193,020 - CA265_RS21075 0.87 +0.5
5,193,020 - CA265_RS21075 0.87 -1.2
5,193,128 - +0.5
5,193,131 + -0.6
5,193,132 - +1.0
5,193,155 + +0.5
5,193,156 - +1.1
5,193,162 + -1.3
5,193,163 - -0.2
5,193,222 + CA265_RS21080 0.26 +0.3
5,193,259 - CA265_RS21080 0.42 +0.5
5,193,311 - CA265_RS21080 0.66 +1.0
5,193,346 + CA265_RS21080 0.82 -1.1
5,193,352 - CA265_RS21080 0.84 -0.6
5,193,359 - CA265_RS21080 0.87 +1.1
5,193,415 + -0.1
5,193,416 - +0.3
5,193,463 + -0.0
5,193,508 - -0.2
5,193,528 + +1.1
5,193,687 - -0.8
5,193,837 - CA265_RS21085 0.21 -0.3
5,193,857 + CA265_RS21085 0.24 +0.7
5,193,857 + CA265_RS21085 0.24 -0.2
5,193,862 + CA265_RS21085 0.25 +0.5
5,193,893 + CA265_RS21085 0.29 -1.4
5,193,894 - CA265_RS21085 0.29 -0.5
5,193,898 - CA265_RS21085 0.30 +0.3
5,193,903 - CA265_RS21085 0.30 -0.3
5,194,068 + CA265_RS21085 0.53 -0.9
5,194,069 - CA265_RS21085 0.54 +0.7
5,194,069 - CA265_RS21085 0.54 -0.2
5,194,105 - CA265_RS21085 0.59 +0.6
5,194,123 - CA265_RS21085 0.61 -0.1
5,194,164 + CA265_RS21085 0.67 -1.0
5,194,258 - CA265_RS21085 0.80 -0.2

Or see this region's nucleotide sequence