Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20325 and CA265_RS20330 are separated by 211 nucleotides CA265_RS20330 and CA265_RS20335 are separated by 11 nucleotides
CA265_RS20325: CA265_RS20325 - hypothetical protein, at 5,025,710 to 5,026,484
_RS20325
CA265_RS20330: CA265_RS20330 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 5,026,696 to 5,028,171
_RS20330
CA265_RS20335: CA265_RS20335 - SusC/RagA family TonB-linked outer membrane protein, at 5,028,183 to 5,031,395
_RS20335
Position (kb) 5026
5027
5028
5029 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5025.757 kb on - strand at 5025.773 kb on + strand at 5025.773 kb on + strand at 5025.773 kb on + strand at 5025.775 kb on + strand at 5025.776 kb on - strand at 5025.794 kb on + strand, within CA265_RS20325 at 5025.794 kb on + strand, within CA265_RS20325 at 5025.795 kb on - strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.836 kb on - strand, within CA265_RS20325 at 5025.862 kb on + strand, within CA265_RS20325 at 5025.862 kb on + strand, within CA265_RS20325 at 5025.864 kb on + strand, within CA265_RS20325 at 5025.881 kb on - strand, within CA265_RS20325 at 5025.910 kb on + strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.919 kb on + strand, within CA265_RS20325 at 5025.923 kb on + strand, within CA265_RS20325 at 5025.923 kb on + strand, within CA265_RS20325 at 5025.954 kb on + strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.995 kb on - strand, within CA265_RS20325 at 5026.015 kb on - strand, within CA265_RS20325 at 5026.066 kb on + strand, within CA265_RS20325 at 5026.077 kb on + strand, within CA265_RS20325 at 5026.078 kb on - strand, within CA265_RS20325 at 5026.093 kb on - strand, within CA265_RS20325 at 5026.219 kb on + strand, within CA265_RS20325 at 5026.263 kb on + strand, within CA265_RS20325 at 5026.264 kb on - strand, within CA265_RS20325 at 5026.277 kb on + strand, within CA265_RS20325 at 5026.278 kb on - strand, within CA265_RS20325 at 5026.278 kb on - strand, within CA265_RS20325 at 5026.283 kb on + strand, within CA265_RS20325 at 5026.284 kb on - strand, within CA265_RS20325 at 5026.315 kb on + strand, within CA265_RS20325 at 5026.384 kb on + strand, within CA265_RS20325 at 5026.481 kb on - strand at 5026.482 kb on + strand at 5026.482 kb on + strand at 5026.483 kb on - strand at 5026.483 kb on - strand at 5026.504 kb on - strand at 5026.512 kb on + strand at 5026.514 kb on + strand at 5026.538 kb on - strand at 5026.538 kb on - strand at 5026.540 kb on + strand at 5026.541 kb on - strand at 5026.543 kb on + strand at 5026.543 kb on + strand at 5026.562 kb on - strand at 5026.593 kb on + strand at 5026.606 kb on + strand at 5026.627 kb on - strand at 5026.633 kb on - strand at 5026.677 kb on + strand at 5026.728 kb on + strand at 5026.732 kb on + strand at 5026.735 kb on + strand at 5026.736 kb on - strand at 5026.753 kb on - strand at 5026.762 kb on - strand at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.907 kb on - strand, within CA265_RS20330 at 5026.923 kb on + strand, within CA265_RS20330 at 5026.929 kb on + strand, within CA265_RS20330 at 5026.983 kb on + strand, within CA265_RS20330 at 5026.986 kb on - strand, within CA265_RS20330 at 5027.009 kb on - strand, within CA265_RS20330 at 5027.029 kb on + strand, within CA265_RS20330 at 5027.031 kb on + strand, within CA265_RS20330 at 5027.038 kb on - strand, within CA265_RS20330 at 5027.042 kb on + strand, within CA265_RS20330 at 5027.043 kb on - strand, within CA265_RS20330 at 5027.043 kb on - strand, within CA265_RS20330 at 5027.049 kb on + strand, within CA265_RS20330 at 5027.176 kb on + strand, within CA265_RS20330 at 5027.179 kb on + strand at 5027.214 kb on + strand, within CA265_RS20330 at 5027.214 kb on + strand, within CA265_RS20330 at 5027.221 kb on - strand, within CA265_RS20330 at 5027.222 kb on + strand, within CA265_RS20330 at 5027.223 kb on - strand, within CA265_RS20330 at 5027.238 kb on + strand, within CA265_RS20330 at 5027.238 kb on + strand, within CA265_RS20330 at 5027.299 kb on - strand, within CA265_RS20330 at 5027.347 kb on + strand, within CA265_RS20330 at 5027.385 kb on - strand, within CA265_RS20330 at 5027.385 kb on - strand, within CA265_RS20330 at 5027.387 kb on - strand, within CA265_RS20330 at 5027.417 kb on + strand, within CA265_RS20330 at 5027.422 kb on - strand, within CA265_RS20330 at 5027.462 kb on + strand, within CA265_RS20330 at 5027.462 kb on + strand, within CA265_RS20330 at 5027.463 kb on - strand, within CA265_RS20330 at 5027.463 kb on - strand, within CA265_RS20330 at 5027.505 kb on - strand, within CA265_RS20330 at 5027.505 kb on - strand, within CA265_RS20330 at 5027.520 kb on - strand, within CA265_RS20330 at 5027.528 kb on - strand, within CA265_RS20330 at 5027.539 kb on - strand, within CA265_RS20330 at 5027.542 kb on - strand, within CA265_RS20330 at 5027.560 kb on - strand, within CA265_RS20330 at 5027.611 kb on - strand, within CA265_RS20330 at 5027.621 kb on - strand, within CA265_RS20330 at 5027.643 kb on + strand, within CA265_RS20330 at 5027.643 kb on + strand, within CA265_RS20330 at 5027.646 kb on - strand, within CA265_RS20330 at 5027.663 kb on + strand, within CA265_RS20330 at 5027.685 kb on - strand, within CA265_RS20330 at 5027.688 kb on + strand, within CA265_RS20330 at 5027.689 kb on - strand, within CA265_RS20330 at 5027.689 kb on - strand, within CA265_RS20330 at 5027.689 kb on - strand, within CA265_RS20330 at 5027.756 kb on - strand, within CA265_RS20330 at 5027.784 kb on - strand, within CA265_RS20330 at 5027.790 kb on + strand, within CA265_RS20330 at 5027.791 kb on - strand, within CA265_RS20330 at 5027.791 kb on - strand, within CA265_RS20330 at 5027.807 kb on - strand, within CA265_RS20330 at 5027.830 kb on - strand, within CA265_RS20330 at 5027.834 kb on - strand, within CA265_RS20330 at 5027.844 kb on + strand, within CA265_RS20330 at 5027.858 kb on - strand, within CA265_RS20330 at 5027.863 kb on + strand, within CA265_RS20330 at 5027.864 kb on - strand, within CA265_RS20330 at 5027.866 kb on + strand, within CA265_RS20330 at 5027.867 kb on - strand, within CA265_RS20330 at 5027.967 kb on + strand, within CA265_RS20330 at 5027.968 kb on - strand, within CA265_RS20330 at 5028.028 kb on + strand at 5028.029 kb on - strand at 5028.077 kb on - strand at 5028.137 kb on - strand at 5028.149 kb on - strand at 5028.149 kb on - strand at 5028.153 kb on - strand at 5028.191 kb on + strand at 5028.192 kb on - strand at 5028.239 kb on - strand at 5028.288 kb on + strand at 5028.371 kb on + strand at 5028.372 kb on - strand at 5028.399 kb on + strand at 5028.410 kb on + strand at 5028.411 kb on - strand at 5028.438 kb on - strand at 5028.456 kb on + strand at 5028.479 kb on + strand at 5028.509 kb on + strand, within CA265_RS20335 at 5028.602 kb on + strand, within CA265_RS20335 at 5028.603 kb on - strand, within CA265_RS20335 at 5028.651 kb on + strand, within CA265_RS20335 at 5028.674 kb on + strand, within CA265_RS20335 at 5028.719 kb on - strand, within CA265_RS20335 at 5028.731 kb on - strand, within CA265_RS20335 at 5028.741 kb on - strand, within CA265_RS20335 at 5028.780 kb on - strand, within CA265_RS20335 at 5028.810 kb on + strand, within CA265_RS20335 at 5028.818 kb on - strand, within CA265_RS20335 at 5028.829 kb on + strand, within CA265_RS20335 at 5028.849 kb on + strand, within CA265_RS20335 at 5028.855 kb on - strand, within CA265_RS20335 at 5028.860 kb on + strand, within CA265_RS20335 at 5028.867 kb on + strand, within CA265_RS20335 at 5028.882 kb on + strand, within CA265_RS20335 at 5028.891 kb on - strand, within CA265_RS20335 at 5028.931 kb on + strand, within CA265_RS20335 at 5028.989 kb on + strand, within CA265_RS20335 at 5029.025 kb on + strand, within CA265_RS20335 at 5029.071 kb on + strand, within CA265_RS20335 at 5029.072 kb on - strand, within CA265_RS20335 at 5029.097 kb on + strand, within CA265_RS20335 at 5029.106 kb on + strand, within CA265_RS20335 at 5029.131 kb on - strand, within CA265_RS20335 at 5029.159 kb on + strand, within CA265_RS20335 at 5029.169 kb on + strand, within CA265_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 5,025,757 - +0.0 5,025,773 + -0.8 5,025,773 + +0.5 5,025,773 + -0.5 5,025,775 + +1.1 5,025,776 - +0.8 5,025,794 + CA265_RS20325 0.11 -0.9 5,025,794 + CA265_RS20325 0.11 -2.2 5,025,795 - CA265_RS20325 0.11 -0.1 5,025,835 + CA265_RS20325 0.16 -1.1 5,025,835 + CA265_RS20325 0.16 -0.5 5,025,835 + CA265_RS20325 0.16 -0.1 5,025,835 + CA265_RS20325 0.16 -1.7 5,025,836 - CA265_RS20325 0.16 +1.1 5,025,862 + CA265_RS20325 0.20 +0.5 5,025,862 + CA265_RS20325 0.20 -1.6 5,025,864 + CA265_RS20325 0.20 -0.9 5,025,881 - CA265_RS20325 0.22 +1.5 5,025,910 + CA265_RS20325 0.26 +0.1 5,025,911 - CA265_RS20325 0.26 +1.5 5,025,911 - CA265_RS20325 0.26 -0.6 5,025,911 - CA265_RS20325 0.26 +1.4 5,025,919 + CA265_RS20325 0.27 +0.2 5,025,923 + CA265_RS20325 0.27 -0.4 5,025,923 + CA265_RS20325 0.27 +0.7 5,025,954 + CA265_RS20325 0.31 +0.1 5,025,992 - CA265_RS20325 0.36 +0.7 5,025,992 - CA265_RS20325 0.36 +1.2 5,025,992 - CA265_RS20325 0.36 +0.7 5,025,995 - CA265_RS20325 0.37 +0.8 5,026,015 - CA265_RS20325 0.39 -0.0 5,026,066 + CA265_RS20325 0.46 -1.1 5,026,077 + CA265_RS20325 0.47 +0.9 5,026,078 - CA265_RS20325 0.47 +0.6 5,026,093 - CA265_RS20325 0.49 -0.1 5,026,219 + CA265_RS20325 0.66 -1.6 5,026,263 + CA265_RS20325 0.71 -0.3 5,026,264 - CA265_RS20325 0.71 +0.9 5,026,277 + CA265_RS20325 0.73 -0.4 5,026,278 - CA265_RS20325 0.73 +0.6 5,026,278 - CA265_RS20325 0.73 -0.1 5,026,283 + CA265_RS20325 0.74 +0.3 5,026,284 - CA265_RS20325 0.74 +0.2 5,026,315 + CA265_RS20325 0.78 +0.3 5,026,384 + CA265_RS20325 0.87 -1.1 5,026,481 - +0.8 5,026,482 + +0.4 5,026,482 + -0.7 5,026,483 - +0.7 5,026,483 - +0.4 5,026,504 - +0.4 5,026,512 + -0.7 5,026,514 + +0.1 5,026,538 - +0.3 5,026,538 - -0.8 5,026,540 + -0.1 5,026,541 - +0.6 5,026,543 + +0.1 5,026,543 + -1.5 5,026,562 - -0.0 5,026,593 + +1.3 5,026,606 + +0.8 5,026,627 - -0.4 5,026,633 - -0.2 5,026,677 + +0.8 5,026,728 + +0.7 5,026,732 + +0.1 5,026,735 + +0.6 5,026,736 - +0.1 5,026,753 - +0.3 5,026,762 - +0.6 5,026,905 + CA265_RS20330 0.14 -0.3 5,026,905 + CA265_RS20330 0.14 +0.7 5,026,905 + CA265_RS20330 0.14 +0.5 5,026,905 + CA265_RS20330 0.14 +1.2 5,026,905 + CA265_RS20330 0.14 +0.2 5,026,906 - CA265_RS20330 0.14 +0.5 5,026,906 - CA265_RS20330 0.14 -0.4 5,026,906 - CA265_RS20330 0.14 +0.7 5,026,906 - CA265_RS20330 0.14 +0.9 5,026,906 - CA265_RS20330 0.14 -0.4 5,026,906 - CA265_RS20330 0.14 +0.6 5,026,906 - CA265_RS20330 0.14 +0.1 5,026,906 - CA265_RS20330 0.14 -0.4 5,026,907 - CA265_RS20330 0.14 +0.0 5,026,923 + CA265_RS20330 0.15 +1.5 5,026,929 + CA265_RS20330 0.16 +0.3 5,026,983 + CA265_RS20330 0.19 +0.8 5,026,986 - CA265_RS20330 0.20 -0.0 5,027,009 - CA265_RS20330 0.21 +0.9 5,027,029 + CA265_RS20330 0.23 +0.7 5,027,031 + CA265_RS20330 0.23 +1.2 5,027,038 - CA265_RS20330 0.23 -0.6 5,027,042 + CA265_RS20330 0.23 +0.5 5,027,043 - CA265_RS20330 0.24 +0.1 5,027,043 - CA265_RS20330 0.24 +0.5 5,027,049 + CA265_RS20330 0.24 +0.6 5,027,176 + CA265_RS20330 0.33 -0.2 5,027,179 + +2.9 5,027,214 + CA265_RS20330 0.35 +1.7 5,027,214 + CA265_RS20330 0.35 +0.4 5,027,221 - CA265_RS20330 0.36 +0.9 5,027,222 + CA265_RS20330 0.36 +1.5 5,027,223 - CA265_RS20330 0.36 +0.8 5,027,238 + CA265_RS20330 0.37 +1.0 5,027,238 + CA265_RS20330 0.37 +0.6 5,027,299 - CA265_RS20330 0.41 +0.3 5,027,347 + CA265_RS20330 0.44 +0.5 5,027,385 - CA265_RS20330 0.47 +0.2 5,027,385 - CA265_RS20330 0.47 -2.3 5,027,387 - CA265_RS20330 0.47 +0.4 5,027,417 + CA265_RS20330 0.49 +0.6 5,027,422 - CA265_RS20330 0.49 +0.5 5,027,462 + CA265_RS20330 0.52 +0.9 5,027,462 + CA265_RS20330 0.52 +1.4 5,027,463 - CA265_RS20330 0.52 +0.1 5,027,463 - CA265_RS20330 0.52 +0.0 5,027,505 - CA265_RS20330 0.55 +0.3 5,027,505 - CA265_RS20330 0.55 +0.1 5,027,520 - CA265_RS20330 0.56 +0.5 5,027,528 - CA265_RS20330 0.56 +0.7 5,027,539 - CA265_RS20330 0.57 -0.3 5,027,542 - CA265_RS20330 0.57 -0.4 5,027,560 - CA265_RS20330 0.59 +0.5 5,027,611 - CA265_RS20330 0.62 +0.3 5,027,621 - CA265_RS20330 0.63 -0.3 5,027,643 + CA265_RS20330 0.64 +0.6 5,027,643 + CA265_RS20330 0.64 +0.0 5,027,646 - CA265_RS20330 0.64 -1.5 5,027,663 + CA265_RS20330 0.66 -0.2 5,027,685 - CA265_RS20330 0.67 +0.4 5,027,688 + CA265_RS20330 0.67 -0.3 5,027,689 - CA265_RS20330 0.67 +0.3 5,027,689 - CA265_RS20330 0.67 +0.6 5,027,689 - CA265_RS20330 0.67 +0.9 5,027,756 - CA265_RS20330 0.72 -0.1 5,027,784 - CA265_RS20330 0.74 +0.6 5,027,790 + CA265_RS20330 0.74 +1.4 5,027,791 - CA265_RS20330 0.74 -0.7 5,027,791 - CA265_RS20330 0.74 +0.1 5,027,807 - CA265_RS20330 0.75 +1.5 5,027,830 - CA265_RS20330 0.77 +0.3 5,027,834 - CA265_RS20330 0.77 +0.5 5,027,844 + CA265_RS20330 0.78 +0.5 5,027,858 - CA265_RS20330 0.79 -0.7 5,027,863 + CA265_RS20330 0.79 +0.8 5,027,864 - CA265_RS20330 0.79 +1.2 5,027,866 + CA265_RS20330 0.79 +0.5 5,027,867 - CA265_RS20330 0.79 +0.5 5,027,967 + CA265_RS20330 0.86 +0.8 5,027,968 - CA265_RS20330 0.86 -0.2 5,028,028 + +0.3 5,028,029 - +0.5 5,028,077 - +1.1 5,028,137 - -0.4 5,028,149 - +0.8 5,028,149 - -0.7 5,028,153 - -1.0 5,028,191 + +0.7 5,028,192 - -0.0 5,028,239 - +0.7 5,028,288 + +0.6 5,028,371 + +0.7 5,028,372 - -0.1 5,028,399 + +0.3 5,028,410 + +0.9 5,028,411 - +0.2 5,028,438 - +0.4 5,028,456 + +2.0 5,028,479 + -0.1 5,028,509 + CA265_RS20335 0.10 +0.5 5,028,602 + CA265_RS20335 0.13 +0.6 5,028,603 - CA265_RS20335 0.13 +1.9 5,028,651 + CA265_RS20335 0.15 +0.8 5,028,674 + CA265_RS20335 0.15 +0.1 5,028,719 - CA265_RS20335 0.17 -0.5 5,028,731 - CA265_RS20335 0.17 +0.3 5,028,741 - CA265_RS20335 0.17 -0.5 5,028,780 - CA265_RS20335 0.19 -0.1 5,028,810 + CA265_RS20335 0.20 +1.2 5,028,818 - CA265_RS20335 0.20 +0.4 5,028,829 + CA265_RS20335 0.20 +0.6 5,028,849 + CA265_RS20335 0.21 +0.1 5,028,855 - CA265_RS20335 0.21 +0.2 5,028,860 + CA265_RS20335 0.21 +0.6 5,028,867 + CA265_RS20335 0.21 +1.2 5,028,882 + CA265_RS20335 0.22 +0.0 5,028,891 - CA265_RS20335 0.22 +0.6 5,028,931 + CA265_RS20335 0.23 +0.8 5,028,989 + CA265_RS20335 0.25 -0.8 5,029,025 + CA265_RS20335 0.26 +2.9 5,029,071 + CA265_RS20335 0.28 +1.8 5,029,072 - CA265_RS20335 0.28 +0.6 5,029,097 + CA265_RS20335 0.28 +0.5 5,029,106 + CA265_RS20335 0.29 +1.2 5,029,131 - CA265_RS20335 0.30 +0.6 5,029,159 + CA265_RS20335 0.30 -0.4 5,029,169 + CA265_RS20335 0.31 -0.1
Or see this region's nucleotide sequence