Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19935

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS19925 and CA265_RS19930 overlap by 4 nucleotidesCA265_RS19930 and CA265_RS19935 are separated by 90 nucleotidesCA265_RS19935 and CA265_RS19940 are separated by 68 nucleotides CA265_RS19925: CA265_RS19925 - hypothetical protein, at 4,934,171 to 4,935,061 _RS19925 CA265_RS19930: CA265_RS19930 - hypothetical protein, at 4,935,058 to 4,935,687 _RS19930 CA265_RS19935: CA265_RS19935 - hypothetical protein, at 4,935,778 to 4,936,323 _RS19935 CA265_RS19940: CA265_RS19940 - hypothetical protein, at 4,936,392 to 4,937,648 _RS19940 Position (kb) 4935 4936 4937Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4934.780 kb on + strand, within CA265_RS19925at 4934.794 kb on - strand, within CA265_RS19925at 4934.794 kb on - strand, within CA265_RS19925at 4934.830 kb on + strand, within CA265_RS19925at 4934.886 kb on + strandat 4934.906 kb on - strand, within CA265_RS19925at 4934.969 kb on - strand, within CA265_RS19925at 4935.051 kb on - strandat 4935.051 kb on - strandat 4935.118 kb on - strandat 4935.128 kb on - strand, within CA265_RS19930at 4935.170 kb on - strand, within CA265_RS19930at 4935.192 kb on - strand, within CA265_RS19930at 4935.234 kb on - strand, within CA265_RS19930at 4935.277 kb on + strand, within CA265_RS19930at 4935.331 kb on + strand, within CA265_RS19930at 4935.332 kb on - strand, within CA265_RS19930at 4935.371 kb on - strand, within CA265_RS19930at 4935.490 kb on - strand, within CA265_RS19930at 4935.525 kb on + strand, within CA265_RS19930at 4935.526 kb on - strand, within CA265_RS19930at 4935.564 kb on + strand, within CA265_RS19930at 4935.692 kb on + strandat 4935.729 kb on - strandat 4935.749 kb on - strandat 4935.779 kb on + strandat 4935.803 kb on - strandat 4935.859 kb on - strand, within CA265_RS19935at 4935.859 kb on - strand, within CA265_RS19935at 4935.925 kb on - strand, within CA265_RS19935at 4935.928 kb on - strand, within CA265_RS19935at 4935.977 kb on + strand, within CA265_RS19935at 4936.058 kb on + strand, within CA265_RS19935at 4936.059 kb on - strand, within CA265_RS19935at 4936.078 kb on + strand, within CA265_RS19935at 4936.079 kb on - strand, within CA265_RS19935at 4936.099 kb on - strand, within CA265_RS19935at 4936.162 kb on - strand, within CA265_RS19935at 4936.309 kb on - strandat 4936.425 kb on - strandat 4936.432 kb on - strandat 4936.490 kb on + strandat 4936.523 kb on - strand, within CA265_RS19940at 4936.527 kb on - strand, within CA265_RS19940at 4936.527 kb on - strand, within CA265_RS19940at 4936.537 kb on + strand, within CA265_RS19940at 4936.596 kb on + strand, within CA265_RS19940at 4936.596 kb on + strand, within CA265_RS19940at 4936.596 kb on + strand, within CA265_RS19940at 4936.600 kb on + strand, within CA265_RS19940at 4936.600 kb on + strand, within CA265_RS19940at 4936.600 kb on + strand, within CA265_RS19940at 4936.601 kb on - strand, within CA265_RS19940at 4936.663 kb on + strand, within CA265_RS19940at 4936.663 kb on + strand, within CA265_RS19940at 4936.702 kb on - strand, within CA265_RS19940at 4936.754 kb on + strand, within CA265_RS19940at 4936.755 kb on - strand, within CA265_RS19940at 4936.758 kb on + strand, within CA265_RS19940at 4936.759 kb on - strand, within CA265_RS19940at 4936.768 kb on + strand, within CA265_RS19940at 4936.787 kb on + strand, within CA265_RS19940at 4936.788 kb on - strand, within CA265_RS19940at 4936.802 kb on + strand, within CA265_RS19940at 4936.862 kb on + strand, within CA265_RS19940at 4936.862 kb on + strand, within CA265_RS19940at 4936.867 kb on - strand, within CA265_RS19940at 4936.879 kb on + strand, within CA265_RS19940at 4936.933 kb on + strand, within CA265_RS19940at 4936.933 kb on + strand, within CA265_RS19940at 4936.933 kb on + strand, within CA265_RS19940at 4936.933 kb on + strand, within CA265_RS19940at 4936.944 kb on - strand, within CA265_RS19940at 4936.944 kb on - strand, within CA265_RS19940at 4936.950 kb on + strand, within CA265_RS19940at 4936.987 kb on + strand, within CA265_RS19940at 4937.054 kb on - strand, within CA265_RS19940at 4937.057 kb on + strand, within CA265_RS19940at 4937.061 kb on + strand, within CA265_RS19940at 4937.061 kb on + strand, within CA265_RS19940at 4937.062 kb on - strand, within CA265_RS19940at 4937.062 kb on - strand, within CA265_RS19940at 4937.062 kb on - strand, within CA265_RS19940at 4937.071 kb on - strand, within CA265_RS19940at 4937.071 kb on - strand, within CA265_RS19940at 4937.096 kb on - strand, within CA265_RS19940at 4937.139 kb on + strand, within CA265_RS19940at 4937.149 kb on + strand, within CA265_RS19940at 4937.186 kb on + strand, within CA265_RS19940at 4937.186 kb on + strand, within CA265_RS19940at 4937.187 kb on - strand, within CA265_RS19940at 4937.187 kb on - strand, within CA265_RS19940at 4937.188 kb on + strand, within CA265_RS19940at 4937.188 kb on + strand, within CA265_RS19940at 4937.188 kb on + strand, within CA265_RS19940at 4937.189 kb on - strand, within CA265_RS19940at 4937.189 kb on - strand, within CA265_RS19940at 4937.189 kb on - strand, within CA265_RS19940at 4937.190 kb on + strand, within CA265_RS19940at 4937.198 kb on - strand, within CA265_RS19940at 4937.208 kb on + strand, within CA265_RS19940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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4,934,780 + CA265_RS19925 0.68 +0.2
4,934,794 - CA265_RS19925 0.70 +0.8
4,934,794 - CA265_RS19925 0.70 +0.3
4,934,830 + CA265_RS19925 0.74 -0.2
4,934,886 + +1.5
4,934,906 - CA265_RS19925 0.82 +0.5
4,934,969 - CA265_RS19925 0.90 -0.1
4,935,051 - +0.8
4,935,051 - +0.9
4,935,118 - +1.2
4,935,128 - CA265_RS19930 0.11 +0.1
4,935,170 - CA265_RS19930 0.18 +0.3
4,935,192 - CA265_RS19930 0.21 +0.2
4,935,234 - CA265_RS19930 0.28 +0.1
4,935,277 + CA265_RS19930 0.35 +1.1
4,935,331 + CA265_RS19930 0.43 +0.8
4,935,332 - CA265_RS19930 0.43 -0.9
4,935,371 - CA265_RS19930 0.50 -1.2
4,935,490 - CA265_RS19930 0.69 +0.5
4,935,525 + CA265_RS19930 0.74 -1.8
4,935,526 - CA265_RS19930 0.74 +0.5
4,935,564 + CA265_RS19930 0.80 +0.9
4,935,692 + +0.3
4,935,729 - +0.6
4,935,749 - -0.0
4,935,779 + +0.3
4,935,803 - +1.4
4,935,859 - CA265_RS19935 0.15 +0.9
4,935,859 - CA265_RS19935 0.15 +0.1
4,935,925 - CA265_RS19935 0.27 +0.3
4,935,928 - CA265_RS19935 0.27 +0.3
4,935,977 + CA265_RS19935 0.36 -1.8
4,936,058 + CA265_RS19935 0.51 +0.2
4,936,059 - CA265_RS19935 0.51 +0.5
4,936,078 + CA265_RS19935 0.55 +0.8
4,936,079 - CA265_RS19935 0.55 +0.9
4,936,099 - CA265_RS19935 0.59 +0.4
4,936,162 - CA265_RS19935 0.70 +0.6
4,936,309 - +0.4
4,936,425 - -1.0
4,936,432 - +1.7
4,936,490 + +0.7
4,936,523 - CA265_RS19940 0.10 +2.3
4,936,527 - CA265_RS19940 0.11 +1.5
4,936,527 - CA265_RS19940 0.11 +2.0
4,936,537 + CA265_RS19940 0.12 +0.8
4,936,596 + CA265_RS19940 0.16 +2.0
4,936,596 + CA265_RS19940 0.16 +2.4
4,936,596 + CA265_RS19940 0.16 +1.6
4,936,600 + CA265_RS19940 0.17 +1.9
4,936,600 + CA265_RS19940 0.17 +2.2
4,936,600 + CA265_RS19940 0.17 +3.7
4,936,601 - CA265_RS19940 0.17 +2.1
4,936,663 + CA265_RS19940 0.22 +1.7
4,936,663 + CA265_RS19940 0.22 +2.1
4,936,702 - CA265_RS19940 0.25 +1.1
4,936,754 + CA265_RS19940 0.29 +2.1
4,936,755 - CA265_RS19940 0.29 +1.4
4,936,758 + CA265_RS19940 0.29 +0.7
4,936,759 - CA265_RS19940 0.29 -1.5
4,936,768 + CA265_RS19940 0.30 +1.9
4,936,787 + CA265_RS19940 0.31 +1.6
4,936,788 - CA265_RS19940 0.32 +1.5
4,936,802 + CA265_RS19940 0.33 +2.1
4,936,862 + CA265_RS19940 0.37 +2.1
4,936,862 + CA265_RS19940 0.37 +2.1
4,936,867 - CA265_RS19940 0.38 +1.0
4,936,879 + CA265_RS19940 0.39 +0.8
4,936,933 + CA265_RS19940 0.43 +1.8
4,936,933 + CA265_RS19940 0.43 +1.7
4,936,933 + CA265_RS19940 0.43 +1.8
4,936,933 + CA265_RS19940 0.43 +2.5
4,936,944 - CA265_RS19940 0.44 +4.0
4,936,944 - CA265_RS19940 0.44 +1.3
4,936,950 + CA265_RS19940 0.44 +1.6
4,936,987 + CA265_RS19940 0.47 +1.6
4,937,054 - CA265_RS19940 0.53 +1.3
4,937,057 + CA265_RS19940 0.53 +1.5
4,937,061 + CA265_RS19940 0.53 +2.7
4,937,061 + CA265_RS19940 0.53 +1.4
4,937,062 - CA265_RS19940 0.53 +1.1
4,937,062 - CA265_RS19940 0.53 +1.4
4,937,062 - CA265_RS19940 0.53 +0.7
4,937,071 - CA265_RS19940 0.54 +3.1
4,937,071 - CA265_RS19940 0.54 +1.0
4,937,096 - CA265_RS19940 0.56 +1.8
4,937,139 + CA265_RS19940 0.59 +2.4
4,937,149 + CA265_RS19940 0.60 +1.5
4,937,186 + CA265_RS19940 0.63 +1.5
4,937,186 + CA265_RS19940 0.63 -0.0
4,937,187 - CA265_RS19940 0.63 +1.8
4,937,187 - CA265_RS19940 0.63 +0.4
4,937,188 + CA265_RS19940 0.63 +1.5
4,937,188 + CA265_RS19940 0.63 +2.3
4,937,188 + CA265_RS19940 0.63 +1.9
4,937,189 - CA265_RS19940 0.63 +1.4
4,937,189 - CA265_RS19940 0.63 +1.5
4,937,189 - CA265_RS19940 0.63 +1.3
4,937,190 + CA265_RS19940 0.63 +1.9
4,937,198 - CA265_RS19940 0.64 +2.1
4,937,208 + CA265_RS19940 0.65 +1.3

Or see this region's nucleotide sequence