Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19680 and CA265_RS19685 are separated by 147 nucleotides CA265_RS19685 and CA265_RS19690 are separated by 38 nucleotides CA265_RS19690 and CA265_RS19695 are separated by 98 nucleotides CA265_RS19695 and CA265_RS19700 are separated by 259 nucleotides
CA265_RS19680: CA265_RS19680 - DNA-binding transcriptional regulator OxyR, at 4,871,687 to 4,872,619
_RS19680
CA265_RS19685: CA265_RS19685 - hypothetical protein, at 4,872,767 to 4,873,006
_RS19685
CA265_RS19690: CA265_RS19690 - hypothetical protein, at 4,873,045 to 4,873,506
_RS19690
CA265_RS19695: CA265_RS19695 - superoxide dismutase, at 4,873,605 to 4,874,213
_RS19695
CA265_RS19700: CA265_RS19700 - tRNA-specific adenosine deaminase, at 4,874,473 to 4,874,940
_RS19700
Position (kb) 4873
4874 Strain fitness (log2 ratio) -1
0
1
2 at 4872.080 kb on - strand, within CA265_RS19680 at 4872.105 kb on + strand, within CA265_RS19680 at 4872.165 kb on + strand, within CA265_RS19680 at 4872.166 kb on - strand, within CA265_RS19680 at 4872.167 kb on + strand, within CA265_RS19680 at 4872.171 kb on - strand, within CA265_RS19680 at 4872.188 kb on + strand, within CA265_RS19680 at 4872.257 kb on - strand, within CA265_RS19680 at 4872.333 kb on + strand, within CA265_RS19680 at 4872.347 kb on + strand, within CA265_RS19680 at 4872.364 kb on - strand, within CA265_RS19680 at 4872.390 kb on + strand, within CA265_RS19680 at 4872.409 kb on - strand, within CA265_RS19680 at 4872.470 kb on - strand, within CA265_RS19680 at 4872.470 kb on - strand, within CA265_RS19680 at 4872.538 kb on + strand at 4872.569 kb on - strand at 4872.618 kb on - strand at 4872.622 kb on + strand at 4872.623 kb on - strand at 4872.665 kb on - strand at 4872.695 kb on + strand at 4872.710 kb on + strand at 4872.711 kb on - strand at 4872.711 kb on - strand at 4872.711 kb on - strand at 4872.796 kb on + strand, within CA265_RS19685 at 4872.801 kb on - strand, within CA265_RS19685 at 4872.812 kb on + strand, within CA265_RS19685 at 4872.818 kb on - strand, within CA265_RS19685 at 4872.820 kb on - strand, within CA265_RS19685 at 4872.842 kb on - strand, within CA265_RS19685 at 4872.862 kb on + strand, within CA265_RS19685 at 4872.863 kb on - strand, within CA265_RS19685 at 4872.863 kb on - strand, within CA265_RS19685 at 4872.950 kb on + strand, within CA265_RS19685 at 4872.951 kb on - strand, within CA265_RS19685 at 4872.968 kb on + strand, within CA265_RS19685 at 4872.969 kb on - strand, within CA265_RS19685 at 4872.990 kb on - strand at 4872.993 kb on - strand at 4872.995 kb on + strand at 4873.252 kb on - strand, within CA265_RS19690 at 4873.339 kb on - strand, within CA265_RS19690 at 4873.339 kb on - strand, within CA265_RS19690 at 4873.347 kb on - strand, within CA265_RS19690 at 4873.347 kb on - strand, within CA265_RS19690 at 4873.432 kb on + strand, within CA265_RS19690 at 4873.438 kb on - strand, within CA265_RS19690 at 4873.438 kb on - strand, within CA265_RS19690 at 4873.537 kb on - strand at 4873.541 kb on - strand at 4873.545 kb on + strand at 4873.606 kb on + strand at 4874.274 kb on - strand at 4874.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 4,872,080 - CA265_RS19680 0.42 -0.3 4,872,105 + CA265_RS19680 0.45 +0.4 4,872,165 + CA265_RS19680 0.51 +0.2 4,872,166 - CA265_RS19680 0.51 +0.1 4,872,167 + CA265_RS19680 0.51 -0.1 4,872,171 - CA265_RS19680 0.52 -0.5 4,872,188 + CA265_RS19680 0.54 -1.4 4,872,257 - CA265_RS19680 0.61 -0.3 4,872,333 + CA265_RS19680 0.69 +0.5 4,872,347 + CA265_RS19680 0.71 +0.6 4,872,364 - CA265_RS19680 0.73 +0.2 4,872,390 + CA265_RS19680 0.75 +1.1 4,872,409 - CA265_RS19680 0.77 +0.2 4,872,470 - CA265_RS19680 0.84 -0.6 4,872,470 - CA265_RS19680 0.84 -0.1 4,872,538 + +0.1 4,872,569 - -1.0 4,872,618 - +1.3 4,872,622 + +0.4 4,872,623 - +0.0 4,872,665 - +0.4 4,872,695 + -1.2 4,872,710 + +0.5 4,872,711 - +0.3 4,872,711 - +1.0 4,872,711 - -0.7 4,872,796 + CA265_RS19685 0.12 -0.9 4,872,801 - CA265_RS19685 0.14 +0.2 4,872,812 + CA265_RS19685 0.19 +0.1 4,872,818 - CA265_RS19685 0.21 +1.5 4,872,820 - CA265_RS19685 0.22 +0.5 4,872,842 - CA265_RS19685 0.31 +0.2 4,872,862 + CA265_RS19685 0.40 +0.3 4,872,863 - CA265_RS19685 0.40 -0.3 4,872,863 - CA265_RS19685 0.40 -0.4 4,872,950 + CA265_RS19685 0.76 +0.2 4,872,951 - CA265_RS19685 0.77 -0.4 4,872,968 + CA265_RS19685 0.84 +0.7 4,872,969 - CA265_RS19685 0.84 +0.3 4,872,990 - +2.0 4,872,993 - +1.3 4,872,995 + +0.6 4,873,252 - CA265_RS19690 0.45 +0.8 4,873,339 - CA265_RS19690 0.64 +1.3 4,873,339 - CA265_RS19690 0.64 +0.6 4,873,347 - CA265_RS19690 0.65 +0.3 4,873,347 - CA265_RS19690 0.65 +0.0 4,873,432 + CA265_RS19690 0.84 +0.2 4,873,438 - CA265_RS19690 0.85 -0.7 4,873,438 - CA265_RS19690 0.85 +0.9 4,873,537 - +0.7 4,873,541 - +0.4 4,873,545 + -0.8 4,873,606 + +0.5 4,874,274 - -0.4 4,874,436 + +0.1
Or see this region's nucleotide sequence