Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18990

Experiment: D-Galacturonic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galacturonic Acid (C)
4,718,517	-				+1.2
4,718,519	-				-0.8
4,718,535	+				+1.0
4,718,547	-				+0.3
4,718,547	-				-1.6
4,718,602	-				-0.8
4,718,621	+				+0.7
4,718,621	+				+1.0
4,718,766	-				-0.1
4,718,771	+				+0.2
4,718,786	+		CA265_RS18985	0.11	+0.7
4,718,787	-		CA265_RS18985	0.11	-0.3
4,718,827	+		CA265_RS18985	0.21	+0.3
4,718,827	+		CA265_RS18985	0.21	+0.4
4,718,828	-		CA265_RS18985	0.21	+1.8
4,718,828	-		CA265_RS18985	0.21	-0.4
4,718,864	-		CA265_RS18985	0.30	-0.4
4,718,915	+		CA265_RS18985	0.42	+1.5
4,718,976	+		CA265_RS18985	0.57	+0.8
4,718,979	-		CA265_RS18985	0.57	-0.3
4,719,022	+		CA265_RS18985	0.68	+0.3
4,719,096	-		CA265_RS18985	0.85	+0.6
4,719,103	+		CA265_RS18985	0.87	+0.5
4,719,104	-		CA265_RS18985	0.87	-0.6
4,719,107	+		CA265_RS18985	0.88	+0.4
4,719,107	+		CA265_RS18985	0.88	+0.2
4,719,108	-		CA265_RS18985	0.88	-0.1
4,719,108	-		CA265_RS18985	0.88	-0.6
4,719,177	-				-0.0
4,719,212	+				+1.4
4,719,231	-				-1.8
4,719,232	+				+1.3
4,719,292	+				-0.2
4,719,292	+				+0.7
4,719,293	-				+0.5
4,719,298	-				+1.0
4,719,365	-				+0.2
4,719,368	+				+1.0
4,719,377	+				+1.6
4,719,378	-				+1.2
4,719,389	+				+1.3
4,719,393	+				+3.1
4,719,393	+				+0.9
4,719,678	+				+0.5
4,719,724	-				+1.2
4,719,741	-				+1.3
4,719,743	+				+0.8
4,719,744	-				+1.4
4,719,744	-				+0.8
4,719,748	+				+0.4
4,719,763	-				+0.4
4,719,791	+				+0.5
4,719,927	+		CA265_RS18990	0.11	-0.1
4,719,928	-		CA265_RS18990	0.11	+0.3
4,720,014	+		CA265_RS18990	0.12	+1.0
4,720,016	+		CA265_RS18990	0.12	+0.1
4,720,016	+		CA265_RS18990	0.12	+1.5
4,720,016	+		CA265_RS18990	0.12	+0.3
4,720,016	+		CA265_RS18990	0.12	-0.1
4,720,017	-		CA265_RS18990	0.12	+0.5
4,720,025	+		CA265_RS18990	0.12	+0.7
4,720,102	+		CA265_RS18990	0.13	+1.0
4,720,103	-		CA265_RS18990	0.13	+1.3
4,720,103	-		CA265_RS18990	0.13	+0.6
4,720,107	+		CA265_RS18990	0.13	+1.0
4,720,108	-		CA265_RS18990	0.13	-0.0
4,720,113	-		CA265_RS18990	0.13	+1.1
4,720,156	-		CA265_RS18990	0.14	+2.2
4,720,164	+		CA265_RS18990	0.14	+0.7
4,720,164	+		CA265_RS18990	0.14	+0.9
4,720,168	+		CA265_RS18990	0.14	+0.6
4,720,168	+		CA265_RS18990	0.14	-0.4
4,720,289	-		CA265_RS18990	0.16	-0.8
4,720,289	-		CA265_RS18990	0.16	+0.7
4,720,332	+		CA265_RS18990	0.16	+0.6
4,720,415	-		CA265_RS18990	0.17	+1.0
4,720,569	-		CA265_RS18990	0.20	+0.2
4,720,580	+		CA265_RS18990	0.20	-0.3
4,720,585	-		CA265_RS18990	0.20	-1.1
4,720,585	-		CA265_RS18990	0.20	-1.4
4,720,608	+		CA265_RS18990	0.20	+0.2
4,720,689	-		CA265_RS18990	0.21	+3.5
4,720,738	-		CA265_RS18990	0.22	+1.0
4,720,760	-		CA265_RS18990	0.22	-1.0
4,720,760	-		CA265_RS18990	0.22	+1.6
4,721,000	+		CA265_RS18990	0.25	+1.0
4,721,050	-		CA265_RS18990	0.26	+1.1
4,721,067	-		CA265_RS18990	0.26	+1.0
4,721,067	-		CA265_RS18990	0.26	+0.3
4,721,170	+		CA265_RS18990	0.28	+0.7
4,721,171	-		CA265_RS18990	0.28	+0.0
4,721,171	-		CA265_RS18990	0.28	+0.3
4,721,194	+		CA265_RS18990	0.28	+1.8
4,721,194	+		CA265_RS18990	0.28	+1.2
4,721,219	+		CA265_RS18990	0.29	-0.8
4,721,246	+		CA265_RS18990	0.29	+0.2
4,721,246	+		CA265_RS18990	0.29	+0.1
4,721,247	-		CA265_RS18990	0.29	+0.4
4,721,249	-		CA265_RS18990	0.29	+1.7
4,721,249	-		CA265_RS18990	0.29	-0.8
4,721,303	+		CA265_RS18990	0.30	+0.5
4,721,304	-		CA265_RS18990	0.30	+1.7
4,721,357	-		CA265_RS18990	0.30	+1.4
4,721,420	+		CA265_RS18990	0.31	+1.4
4,721,429	+		CA265_RS18990	0.31	+1.6
4,721,441	+		CA265_RS18990	0.32	+1.1
4,721,450	-		CA265_RS18990	0.32	+0.2
4,721,477	-		CA265_RS18990	0.32	+0.9
4,721,530	-		CA265_RS18990	0.33	+0.3
4,721,530	-		CA265_RS18990	0.33	+1.5
4,721,559	+		CA265_RS18990	0.33	+1.0
4,721,559	+		CA265_RS18990	0.33	+1.5
4,721,640	+		CA265_RS18990	0.34	+1.1
4,721,681	+		CA265_RS18990	0.35	+0.3
4,721,814	-		CA265_RS18990	0.37	+0.8
4,721,815	+		CA265_RS18990	0.37	+0.4
4,721,815	+		CA265_RS18990	0.37	-0.4
4,721,816	-		CA265_RS18990	0.37	-1.3
4,721,816	-		CA265_RS18990	0.37	+0.6
4,721,858	+		CA265_RS18990	0.37	+0.9
4,721,858	+		CA265_RS18990	0.37	+0.0
4,721,878	+		CA265_RS18990	0.38	+1.2
4,721,879	-		CA265_RS18990	0.38	+0.1
4,721,924	+		CA265_RS18990	0.38	+1.1
4,721,929	-		CA265_RS18990	0.38	+0.7
4,721,945	+		CA265_RS18990	0.39	+1.0
4,721,945	+		CA265_RS18990	0.39	+0.7
4,721,946	-		CA265_RS18990	0.39	+0.8
4,721,946	-		CA265_RS18990	0.39	+0.5
4,721,946	-		CA265_RS18990	0.39	+0.8
4,722,046	-		CA265_RS18990	0.40	+0.3
4,722,056	-		CA265_RS18990	0.40	-1.5
4,722,056	-		CA265_RS18990	0.40	-0.7
4,722,058	+		CA265_RS18990	0.40	-0.3
4,722,071	+		CA265_RS18990	0.40	+0.4
4,722,089	-		CA265_RS18990	0.41	-0.1
4,722,107	+		CA265_RS18990	0.41	+0.5
4,722,108	-		CA265_RS18990	0.41	+1.3
4,722,115	-		CA265_RS18990	0.41	+0.6
4,722,156	+		CA265_RS18990	0.42	+1.1
4,722,165	-		CA265_RS18990	0.42	+0.6
4,722,184	+		CA265_RS18990	0.42	+0.8
4,722,222	+		CA265_RS18990	0.42	+0.2
4,722,284	+		CA265_RS18990	0.43	+0.8
4,722,285	-		CA265_RS18990	0.43	+1.5
4,722,423	+		CA265_RS18990	0.45	+1.5
4,722,451	+		CA265_RS18990	0.46	+0.7
4,722,452	-		CA265_RS18990	0.46	+0.4
4,722,611	-		CA265_RS18990	0.48	-0.7
4,722,633	+		CA265_RS18990	0.48	+1.3
4,722,648	+		CA265_RS18990	0.48	+1.3
4,722,649	-		CA265_RS18990	0.48	-0.9
4,722,719	+		CA265_RS18990	0.49	-0.4
4,722,721	+		CA265_RS18990	0.49	+0.5
4,722,792	-		CA265_RS18990	0.50	+0.9
4,722,881	+		CA265_RS18990	0.52	+1.3
4,722,897	-		CA265_RS18990	0.52	-0.0
4,722,897	-		CA265_RS18990	0.52	+0.7
4,722,932	-		CA265_RS18990	0.52	+1.3
4,722,936	-		CA265_RS18990	0.52	+0.7
4,722,936	-		CA265_RS18990	0.52	-0.2
4,722,981	+		CA265_RS18990	0.53	+0.9
4,723,102	-		CA265_RS18990	0.55	-0.1
4,723,227	-		CA265_RS18990	0.56	+0.3
4,723,240	+		CA265_RS18990	0.57	-0.1
4,723,245	-		CA265_RS18990	0.57	+0.1
4,723,271	-		CA265_RS18990	0.57	+2.8
4,723,315	-		CA265_RS18990	0.58	+0.7
4,723,380	+		CA265_RS18990	0.59	-0.5
4,723,444	+		CA265_RS18990	0.59	+0.4
4,723,445	-		CA265_RS18990	0.59	+0.5
4,723,445	-		CA265_RS18990	0.59	+0.3
4,723,467	-		CA265_RS18990	0.60	+1.1
4,723,467	-		CA265_RS18990	0.60	+0.0
4,723,569	-		CA265_RS18990	0.61	-1.4
4,723,569	-		CA265_RS18990	0.61	+0.5
4,723,584	-		CA265_RS18990	0.61	+1.0
4,723,599	-		CA265_RS18990	0.62	+0.7
4,723,601	-		CA265_RS18990	0.62	-0.6
4,723,657	-		CA265_RS18990	0.62	+0.9
4,723,671	-		CA265_RS18990	0.63	+0.6
4,723,765	-		CA265_RS18990	0.64	+0.9
4,723,769	-		CA265_RS18990	0.64	-0.6
4,723,800	+		CA265_RS18990	0.64	+0.5
4,723,800	+				+1.9
4,723,844	-		CA265_RS18990	0.65	+0.2
4,723,927	+		CA265_RS18990	0.66	+0.1
4,723,928	-		CA265_RS18990	0.66	-0.6
4,723,928	-		CA265_RS18990	0.66	-0.3
4,723,932	-		CA265_RS18990	0.66	-0.2
4,723,934	+		CA265_RS18990	0.66	+0.3
4,724,159	+		CA265_RS18990	0.69	+1.5
4,724,183	-		CA265_RS18990	0.70	+1.7
4,724,199	+		CA265_RS18990	0.70	-0.2
4,724,289	-		CA265_RS18990	0.71	+0.3
4,724,316	-		CA265_RS18990	0.72	+0.3
4,724,384	+		CA265_RS18990	0.72	+0.7
4,724,384	+		CA265_RS18990	0.72	+0.6
4,724,386	+		CA265_RS18990	0.73	+0.8
4,724,386	+		CA265_RS18990	0.73	+0.8
4,724,495	+		CA265_RS18990	0.74	+0.2
4,724,495	+		CA265_RS18990	0.74	+0.6
4,724,495	+		CA265_RS18990	0.74	-1.3
4,724,496	-		CA265_RS18990	0.74	+1.7
4,724,496	-		CA265_RS18990	0.74	-0.3
4,724,498	-		CA265_RS18990	0.74	+0.8
4,724,809	+		CA265_RS18990	0.78	+0.1
4,724,809	+		CA265_RS18990	0.78	+0.2
4,724,814	-		CA265_RS18990	0.78	+0.9
4,724,838	-		CA265_RS18990	0.79	+0.8
4,724,946	+		CA265_RS18990	0.80	+0.4
4,724,957	-		CA265_RS18990	0.80	+0.6
4,724,957	-		CA265_RS18990	0.80	+1.3
4,724,957	-		CA265_RS18990	0.80	-0.3
4,724,960	+		CA265_RS18990	0.80	+0.2
4,724,960	+		CA265_RS18990	0.80	-0.8
4,724,961	-		CA265_RS18990	0.81	+0.4
4,724,962	+		CA265_RS18990	0.81	+0.2
4,724,963	-		CA265_RS18990	0.81	-0.0
4,725,015	+		CA265_RS18990	0.81	-0.4
4,725,015	+		CA265_RS18990	0.81	+0.8
4,725,015	+		CA265_RS18990	0.81	+0.4
4,725,042	-		CA265_RS18990	0.82	+0.5
4,725,105	-		CA265_RS18990	0.82	+0.1
4,725,143	+		CA265_RS18990	0.83	+1.3
4,725,175	+		CA265_RS18990	0.83	+1.1
4,725,183	+		CA265_RS18990	0.84	-0.5
4,725,184	-		CA265_RS18990	0.84	+0.5
4,725,315	+		CA265_RS18990	0.85	-0.8
4,725,335	+		CA265_RS18990	0.86	+1.1
4,725,336	-		CA265_RS18990	0.86	+2.0
4,725,382	-		CA265_RS18990	0.86	-0.0
4,725,454	+		CA265_RS18990	0.87	-0.3
4,725,472	+		CA265_RS18990	0.88	+0.6
4,725,473	-		CA265_RS18990	0.88	+0.7
4,725,498	-		CA265_RS18990	0.88	+1.0
4,725,519	-		CA265_RS18990	0.88	+0.6
4,725,519	-		CA265_RS18990	0.88	+1.3
4,725,524	+		CA265_RS18990	0.88	-0.4
4,725,573	+		CA265_RS18990	0.89	+0.7
4,725,574	-		CA265_RS18990	0.89	+1.0
4,725,631	-		CA265_RS18990	0.90	+1.1
4,725,638	+		CA265_RS18990	0.90	+0.3
4,725,642	+		CA265_RS18990	0.90	-0.3
4,725,678	+				+0.7
4,725,683	+				+1.9
4,725,684	-				+0.1
4,725,704	-				+0.7
4,725,752	-				+1.4
4,725,805	-				-0.5
4,725,918	+				+0.2
4,725,986	+				+1.8
4,725,993	-				+0.9
4,726,001	-				+0.8
4,726,008	+				+1.1
4,726,087	-				+0.6
4,726,090	+				+0.4
4,726,091	-				+1.8
4,726,097	+				+1.7
4,726,146	-				+2.1
4,726,177	-				+0.8
4,726,266	-				+1.3
4,726,271	+				+0.1
4,726,354	-				+1.5
4,726,380	-				+0.2
4,726,399	+				-1.3
4,726,523	-		CA265_RS18995	0.25	-0.5
4,726,678	+		CA265_RS18995	0.52	-0.6
4,726,706	-		CA265_RS18995	0.56	-2.7
4,726,711	+		CA265_RS18995	0.57	-2.7
4,726,746	-		CA265_RS18995	0.63	+0.2
4,726,789	+		CA265_RS18995	0.71	+1.0
4,726,789	+		CA265_RS18995	0.71	-1.8
4,726,823	+		CA265_RS18995	0.76	-2.1
4,726,857	+		CA265_RS18995	0.82	+0.3
4,726,858	-		CA265_RS18995	0.82	-0.0
4,726,861	+		CA265_RS18995	0.83	+0.2
4,726,885	-		CA265_RS18995	0.87	-0.6
4,726,991	+				-0.5
4,726,992	-				+0.1
4,726,993	+				-0.4
4,726,994	-				+0.7
4,727,039	+				-0.3
4,727,059	+				-2.7
4,727,059	+				+1.0
4,727,060	-				+0.1
4,727,076	-				+0.1
4,727,087	+				+0.3
4,727,087	+				-1.0
4,727,099	-				-1.0
4,727,154	-				-1.4
4,727,172	+				-0.1
4,727,173	-				-0.1
4,727,216	-		CA265_RS19000	0.11	-1.2
4,727,239	+		CA265_RS19000	0.12	+0.6
4,727,240	-		CA265_RS19000	0.12	-1.6
4,727,303	+		CA265_RS19000	0.15	-0.1
4,727,357	-		CA265_RS19000	0.17	-0.9