Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15635

Experiment: D-Galacturonic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galacturonic Acid (C)
3,936,398	+		CA265_RS15630	0.41	+0.6
3,936,416	+		CA265_RS15630	0.42	+0.2
3,936,416	+		CA265_RS15630	0.42	+0.4
3,936,417	-		CA265_RS15630	0.42	+0.5
3,936,456	-		CA265_RS15630	0.45	+0.2
3,936,477	+		CA265_RS15630	0.46	+0.6
3,936,477	+		CA265_RS15630	0.46	-0.0
3,936,526	+		CA265_RS15630	0.49	-1.4
3,936,554	+		CA265_RS15630	0.51	+1.5
3,936,598	+		CA265_RS15630	0.53	-0.2
3,936,599	-		CA265_RS15630	0.54	-0.3
3,936,599	-		CA265_RS15630	0.54	-0.5
3,936,635	-		CA265_RS15630	0.56	-0.3
3,936,687	+		CA265_RS15630	0.59	-0.4
3,936,781	+		CA265_RS15630	0.65	+1.8
3,936,782	-		CA265_RS15630	0.65	-0.6
3,936,792	-		CA265_RS15630	0.65	+0.2
3,936,813	+		CA265_RS15630	0.67	-0.0
3,936,814	-		CA265_RS15630	0.67	-0.3
3,936,877	+		CA265_RS15630	0.71	-2.4
3,936,878	-		CA265_RS15630	0.71	+0.1
3,936,890	-		CA265_RS15630	0.71	+1.3
3,936,926	+		CA265_RS15630	0.74	-0.3
3,936,927	-		CA265_RS15630	0.74	+0.1
3,936,928	+		CA265_RS15630	0.74	-1.2
3,936,928	+		CA265_RS15630	0.74	-0.2
3,936,929	-		CA265_RS15630	0.74	+0.8
3,936,933	+		CA265_RS15630	0.74	+1.3
3,936,934	-		CA265_RS15630	0.74	-1.9
3,936,934	-		CA265_RS15630	0.74	-0.4
3,936,934	-		CA265_RS15630	0.74	-0.2
3,936,994	+		CA265_RS15630	0.78	-0.8
3,937,009	+		CA265_RS15630	0.79	-0.3
3,937,012	-		CA265_RS15630	0.79	+0.1
3,937,108	-		CA265_RS15630	0.85	-0.0
3,937,171	+		CA265_RS15630	0.89	+0.4
3,937,173	+		CA265_RS15630	0.89	-0.3
3,937,173	+		CA265_RS15630	0.89	-0.6
3,937,174	-		CA265_RS15630	0.89	-0.1
3,937,257	-				+0.7
3,937,257	-				-1.2
3,937,257	-				+0.3
3,937,257	-				-2.1
3,937,257	-				-0.4
3,937,257	-				-0.0
3,937,259	-				-1.8
3,937,269	+				-0.1
3,937,297	-				+0.1
3,937,343	+				-0.1
3,937,364	-				-0.5
3,937,371	+				+0.3
3,937,450	-				-0.3
3,937,492	+				-2.1
3,937,492	+				-0.5
3,937,492	+				+1.0
3,937,493	-				-0.5
3,937,594	+				+0.2
3,937,689	-				+0.1
3,937,691	+				-0.2
3,937,692	-				-1.1
3,937,716	+				+0.1
3,937,726	-		CA265_RS15635	0.10	-1.1
3,937,734	+		CA265_RS15635	0.10	+0.7
3,937,734	+		CA265_RS15635	0.10	+0.9
3,937,735	-		CA265_RS15635	0.10	+0.1
3,937,797	+		CA265_RS15635	0.12	+0.4
3,937,812	-		CA265_RS15635	0.13	+0.4
3,937,859	-		CA265_RS15635	0.14	-0.2
3,937,886	+		CA265_RS15635	0.15	-1.0
3,937,886	+		CA265_RS15635	0.15	+0.0
3,937,934	+		CA265_RS15635	0.16	-1.0
3,937,934	+		CA265_RS15635	0.16	-0.1
3,937,935	-		CA265_RS15635	0.16	+0.3
3,937,968	+		CA265_RS15635	0.17	+1.1
3,937,972	-		CA265_RS15635	0.17	+1.5
3,938,046	-		CA265_RS15635	0.19	-0.6
3,938,046	-		CA265_RS15635	0.19	-0.5
3,938,067	+		CA265_RS15635	0.20	+0.2
3,938,108	-		CA265_RS15635	0.21	-0.5
3,938,126	+		CA265_RS15635	0.22	-0.1
3,938,134	-		CA265_RS15635	0.22	+0.5
3,938,196	+		CA265_RS15635	0.24	+0.6
3,938,226	+		CA265_RS15635	0.25	+0.3
3,938,285	-		CA265_RS15635	0.26	+0.3
3,938,449	+		CA265_RS15635	0.31	-0.1
3,938,450	-		CA265_RS15635	0.31	-0.4
3,938,488	+		CA265_RS15635	0.32	-0.1
3,938,488	+		CA265_RS15635	0.32	+0.8
3,938,489	-		CA265_RS15635	0.32	-0.3
3,938,490	+		CA265_RS15635	0.32	-1.3
3,938,502	-		CA265_RS15635	0.33	-0.0
3,938,580	+		CA265_RS15635	0.35	+0.4
3,938,581	-		CA265_RS15635	0.35	-0.1
3,938,584	+		CA265_RS15635	0.35	-0.4
3,938,619	+		CA265_RS15635	0.36	-0.1
3,938,655	+		CA265_RS15635	0.37	-1.2
3,938,656	-		CA265_RS15635	0.37	-0.3
3,938,656	-		CA265_RS15635	0.37	+0.4
3,938,665	+		CA265_RS15635	0.37	+0.2
3,938,665	+		CA265_RS15635	0.37	+1.2
3,938,695	-		CA265_RS15635	0.38	+1.6
3,938,720	-		CA265_RS15635	0.39	+0.3
3,938,767	-		CA265_RS15635	0.40	-1.3
3,938,861	+		CA265_RS15635	0.43	+0.4
3,938,901	+		CA265_RS15635	0.44	+0.2
3,938,901	+		CA265_RS15635	0.44	+0.2
3,938,944	-		CA265_RS15635	0.45	+0.6
3,938,958	+		CA265_RS15635	0.46	+0.8
3,938,961	-		CA265_RS15635	0.46	+0.3
3,939,006	+		CA265_RS15635	0.47	+0.4
3,939,007	-		CA265_RS15635	0.47	+1.8
3,939,056	-		CA265_RS15635	0.49	+0.6
3,939,124	-		CA265_RS15635	0.51	+1.0
3,939,145	+		CA265_RS15635	0.51	-0.3
3,939,145	+		CA265_RS15635	0.51	-0.3
3,939,146	-		CA265_RS15635	0.51	+0.0
3,939,146	-		CA265_RS15635	0.51	+0.8
3,939,164	-		CA265_RS15635	0.52	+0.4
3,939,183	+		CA265_RS15635	0.52	-0.5
3,939,248	-		CA265_RS15635	0.54	+0.0
3,939,252	+		CA265_RS15635	0.54	+1.1
3,939,253	-		CA265_RS15635	0.54	+0.1
3,939,259	-		CA265_RS15635	0.54	-0.2
3,939,346	+		CA265_RS15635	0.57	+0.3
3,939,360	+		CA265_RS15635	0.57	+0.4
3,939,378	+		CA265_RS15635	0.58	+0.4
3,939,395	+		CA265_RS15635	0.58	-0.3
3,939,422	+		CA265_RS15635	0.59	-0.2
3,939,423	-		CA265_RS15635	0.59	-0.3
3,939,423	-		CA265_RS15635	0.59	-0.4
3,939,486	-		CA265_RS15635	0.61	-1.3
3,939,486	-		CA265_RS15635	0.61	+0.1
3,939,532	-		CA265_RS15635	0.62	-0.8
3,939,561	+		CA265_RS15635	0.63	-0.4
3,939,575	-		CA265_RS15635	0.64	+0.6
3,939,603	-		CA265_RS15635	0.64	+1.8
3,939,651	+		CA265_RS15635	0.66	+0.1
3,939,651	+		CA265_RS15635	0.66	+0.1
3,939,711	-		CA265_RS15635	0.68	-0.3
3,939,736	+		CA265_RS15635	0.68	-0.0
3,939,751	-		CA265_RS15635	0.69	+0.1
3,939,847	+		CA265_RS15635	0.71	+0.9
3,939,847	+		CA265_RS15635	0.71	+0.8
3,939,869	+		CA265_RS15635	0.72	+0.1
3,939,910	-		CA265_RS15635	0.73	+0.1
3,940,017	-		CA265_RS15635	0.76	-0.6
3,940,017	-		CA265_RS15635	0.76	+0.0
3,940,047	+		CA265_RS15635	0.77	+0.9
3,940,048	-		CA265_RS15635	0.77	-0.7
3,940,051	-		CA265_RS15635	0.77	+0.5
3,940,074	+		CA265_RS15635	0.78	+0.2
3,940,084	-		CA265_RS15635	0.78	-0.5
3,940,100	+		CA265_RS15635	0.79	+0.7
3,940,101	-		CA265_RS15635	0.79	+0.1
3,940,129	+		CA265_RS15635	0.80	+0.5
3,940,147	-		CA265_RS15635	0.80	-0.3
3,940,212	+		CA265_RS15635	0.82	-0.0
3,940,267	-		CA265_RS15635	0.84	-0.0
3,940,300	-		CA265_RS15635	0.85	-0.5
3,940,302	+		CA265_RS15635	0.85	+0.2
3,940,320	+		CA265_RS15635	0.85	-1.4
3,940,419	+		CA265_RS15635	0.88	-0.8
3,940,419	+		CA265_RS15635	0.88	+0.2
3,940,420	-		CA265_RS15635	0.88	+0.9
3,940,442	-		CA265_RS15635	0.89	-0.2
3,940,477	+		CA265_RS15635	0.90	+0.3
3,940,552	+				+0.1
3,940,553	-				+0.5
3,940,564	+				+0.2
3,940,699	-				-0.9
3,940,712	-				-0.8
3,940,808	-				-0.2
3,940,808	-				-1.0
3,940,816	+				+0.1
3,940,850	+				+1.8
3,940,851	-				+0.7
3,940,881	-				-0.3
3,940,905	-				+0.3
3,940,918	-				-0.1
3,940,921	+				-0.1
3,940,937	+				-0.0
3,941,022	+				+0.8
3,941,022	+				+0.2
3,941,023	-				+0.0
3,941,132	-		CA265_RS15640	0.15	+1.1
3,941,134	+		CA265_RS15640	0.15	+1.1
3,941,139	+		CA265_RS15640	0.16	+0.4
3,941,140	-		CA265_RS15640	0.16	+0.1
3,941,157	+		CA265_RS15640	0.17	+0.3
3,941,158	-		CA265_RS15640	0.17	+0.4
3,941,164	+				+0.8
3,941,164	+		CA265_RS15640	0.18	+0.9
3,941,165	-		CA265_RS15640	0.18	+0.4
3,941,206	+		CA265_RS15640	0.21	+0.6
3,941,211	+		CA265_RS15640	0.22	+0.7
3,941,271	+		CA265_RS15640	0.27	+0.5
3,941,277	+		CA265_RS15640	0.27	+0.1
3,941,284	-		CA265_RS15640	0.28	+0.2
3,941,321	-		CA265_RS15640	0.31	+0.6
3,941,385	+		CA265_RS15640	0.36	+1.2
3,941,403	+		CA265_RS15640	0.38	-0.5
3,941,404	-		CA265_RS15640	0.38	+0.4
3,941,430	+		CA265_RS15640	0.40	+0.8
3,941,509	-		CA265_RS15640	0.47	+0.7
3,941,521	+		CA265_RS15640	0.48	+1.3
3,941,554	+		CA265_RS15640	0.51	+1.1
3,941,555	-		CA265_RS15640	0.51	-0.4
3,941,591	-		CA265_RS15640	0.54	+0.3
3,941,625	-		CA265_RS15640	0.56	+0.6
3,941,639	-		CA265_RS15640	0.58	+0.5
3,941,639	-		CA265_RS15640	0.58	+0.0
3,941,658	+		CA265_RS15640	0.59	+0.5
3,941,777	-		CA265_RS15640	0.69	-0.0
3,941,805	+		CA265_RS15640	0.72	+0.1