Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04105 and CA265_RS04110 are separated by 2 nucleotides CA265_RS04110 and CA265_RS04115 are separated by 193 nucleotides
CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607
_RS04105
CA265_RS04110: CA265_RS04110 - phosphoadenosine phosphosulfate reductase, at 989,610 to 990,308
_RS04110
CA265_RS04115: CA265_RS04115 - sulfate adenylyltransferase, at 990,502 to 991,407
_RS04115
Position (kb) 989
990
991 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 988.635 kb on + strand, within CA265_RS04105 at 988.658 kb on + strand, within CA265_RS04105 at 988.659 kb on - strand, within CA265_RS04105 at 988.695 kb on + strand, within CA265_RS04105 at 988.778 kb on + strand, within CA265_RS04105 at 988.856 kb on + strand, within CA265_RS04105 at 988.857 kb on - strand, within CA265_RS04105 at 988.886 kb on + strand, within CA265_RS04105 at 989.017 kb on - strand, within CA265_RS04105 at 989.051 kb on + strand, within CA265_RS04105 at 989.114 kb on - strand, within CA265_RS04105 at 989.116 kb on - strand, within CA265_RS04105 at 989.116 kb on - strand, within CA265_RS04105 at 989.116 kb on - strand, within CA265_RS04105 at 989.116 kb on - strand, within CA265_RS04105 at 989.130 kb on - strand, within CA265_RS04105 at 989.137 kb on + strand, within CA265_RS04105 at 989.146 kb on + strand, within CA265_RS04105 at 989.147 kb on - strand, within CA265_RS04105 at 989.147 kb on - strand, within CA265_RS04105 at 989.171 kb on - strand, within CA265_RS04105 at 989.173 kb on - strand, within CA265_RS04105 at 989.178 kb on - strand, within CA265_RS04105 at 989.183 kb on + strand, within CA265_RS04105 at 989.319 kb on - strand, within CA265_RS04105 at 989.331 kb on - strand, within CA265_RS04105 at 989.413 kb on - strand, within CA265_RS04105 at 989.421 kb on + strand, within CA265_RS04105 at 989.429 kb on + strand, within CA265_RS04105 at 989.466 kb on + strand at 989.565 kb on - strand at 989.655 kb on - strand at 989.685 kb on - strand, within CA265_RS04110 at 989.766 kb on - strand, within CA265_RS04110 at 989.775 kb on - strand, within CA265_RS04110 at 989.818 kb on - strand, within CA265_RS04110 at 989.840 kb on - strand, within CA265_RS04110 at 989.840 kb on - strand, within CA265_RS04110 at 989.848 kb on - strand, within CA265_RS04110 at 989.863 kb on - strand, within CA265_RS04110 at 989.863 kb on - strand, within CA265_RS04110 at 989.962 kb on - strand, within CA265_RS04110 at 989.962 kb on - strand, within CA265_RS04110 at 989.996 kb on - strand, within CA265_RS04110 at 990.057 kb on - strand, within CA265_RS04110 at 990.108 kb on - strand, within CA265_RS04110 at 990.125 kb on - strand, within CA265_RS04110 at 990.166 kb on - strand, within CA265_RS04110 at 990.198 kb on - strand, within CA265_RS04110 at 990.306 kb on + strand at 990.307 kb on - strand at 990.307 kb on - strand at 990.307 kb on - strand at 990.433 kb on + strand at 990.434 kb on - strand at 990.461 kb on - strand at 990.507 kb on + strand at 990.507 kb on + strand at 990.513 kb on + strand at 990.514 kb on - strand at 990.693 kb on + strand, within CA265_RS04115 at 990.721 kb on - strand, within CA265_RS04115 at 990.725 kb on - strand, within CA265_RS04115 at 990.789 kb on - strand, within CA265_RS04115 at 990.877 kb on + strand, within CA265_RS04115 at 990.877 kb on + strand, within CA265_RS04115 at 991.013 kb on - strand, within CA265_RS04115 at 991.090 kb on + strand, within CA265_RS04115 at 991.190 kb on + strand, within CA265_RS04115 at 991.190 kb on + strand, within CA265_RS04115 at 991.194 kb on + strand, within CA265_RS04115 at 991.252 kb on - strand, within CA265_RS04115 at 991.303 kb on - strand, within CA265_RS04115 at 991.303 kb on - strand, within CA265_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 988,635 + CA265_RS04105 0.36 -2.8 988,658 + CA265_RS04105 0.37 -4.0 988,659 - CA265_RS04105 0.37 -2.2 988,695 + CA265_RS04105 0.40 +0.5 988,778 + CA265_RS04105 0.45 -2.4 988,856 + CA265_RS04105 0.50 -5.1 988,857 - CA265_RS04105 0.50 -1.8 988,886 + CA265_RS04105 0.52 -3.8 989,017 - CA265_RS04105 0.61 -4.4 989,051 + CA265_RS04105 0.63 -4.8 989,114 - CA265_RS04105 0.67 -2.7 989,116 - CA265_RS04105 0.67 -3.9 989,116 - CA265_RS04105 0.67 -2.5 989,116 - CA265_RS04105 0.67 -3.6 989,116 - CA265_RS04105 0.67 -1.7 989,130 - CA265_RS04105 0.68 -3.1 989,137 + CA265_RS04105 0.69 -3.2 989,146 + CA265_RS04105 0.69 -4.0 989,147 - CA265_RS04105 0.70 -4.1 989,147 - CA265_RS04105 0.70 -2.5 989,171 - CA265_RS04105 0.71 -3.9 989,173 - CA265_RS04105 0.71 -1.7 989,178 - CA265_RS04105 0.72 -3.5 989,183 + CA265_RS04105 0.72 -4.0 989,319 - CA265_RS04105 0.81 -3.7 989,331 - CA265_RS04105 0.82 -3.9 989,413 - CA265_RS04105 0.87 -2.2 989,421 + CA265_RS04105 0.88 -3.3 989,429 + CA265_RS04105 0.88 -3.3 989,466 + -1.7 989,565 - -2.6 989,655 - -3.3 989,685 - CA265_RS04110 0.11 -4.5 989,766 - CA265_RS04110 0.22 -4.2 989,775 - CA265_RS04110 0.24 -5.2 989,818 - CA265_RS04110 0.30 -3.6 989,840 - CA265_RS04110 0.33 -4.9 989,840 - CA265_RS04110 0.33 -2.8 989,848 - CA265_RS04110 0.34 -3.3 989,863 - CA265_RS04110 0.36 -3.1 989,863 - CA265_RS04110 0.36 -3.4 989,962 - CA265_RS04110 0.50 -4.9 989,962 - CA265_RS04110 0.50 -4.5 989,996 - CA265_RS04110 0.55 -1.7 990,057 - CA265_RS04110 0.64 -3.5 990,108 - CA265_RS04110 0.71 -4.1 990,125 - CA265_RS04110 0.74 -2.5 990,166 - CA265_RS04110 0.80 -2.8 990,198 - CA265_RS04110 0.84 -3.7 990,306 + -0.9 990,307 - -3.6 990,307 - -2.0 990,307 - -3.2 990,433 + -0.2 990,434 - -4.5 990,461 - -4.7 990,507 + -1.8 990,507 + -2.9 990,513 + -1.1 990,514 - -3.9 990,693 + CA265_RS04115 0.21 -3.2 990,721 - CA265_RS04115 0.24 -3.2 990,725 - CA265_RS04115 0.25 -3.9 990,789 - CA265_RS04115 0.32 -1.7 990,877 + CA265_RS04115 0.41 -3.4 990,877 + CA265_RS04115 0.41 -1.2 991,013 - CA265_RS04115 0.56 -2.4 991,090 + CA265_RS04115 0.65 -1.8 991,190 + CA265_RS04115 0.76 -2.1 991,190 + CA265_RS04115 0.76 -3.5 991,194 + CA265_RS04115 0.76 -2.2 991,252 - CA265_RS04115 0.83 -4.1 991,303 - CA265_RS04115 0.88 -4.9 991,303 - CA265_RS04115 0.88 -3.5
Or see this region's nucleotide sequence