Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03905

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03900 and CA265_RS03905 are separated by 351 nucleotidesCA265_RS03905 and CA265_RS03910 are separated by 13 nucleotidesCA265_RS03910 and CA265_RS03915 are separated by 414 nucleotides CA265_RS03900: CA265_RS03900 - hypothetical protein, at 919,572 to 920,693 _RS03900 CA265_RS03905: CA265_RS03905 - hypothetical protein, at 921,045 to 921,836 _RS03905 CA265_RS03910: CA265_RS03910 - hypothetical protein, at 921,850 to 922,419 _RS03910 CA265_RS03915: CA265_RS03915 - hypothetical protein, at 922,834 to 924,537 _RS03915 Position (kb) 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1at 920.076 kb on + strand, within CA265_RS03900at 920.256 kb on + strand, within CA265_RS03900at 920.256 kb on + strand, within CA265_RS03900at 920.256 kb on + strand, within CA265_RS03900at 920.257 kb on - strand, within CA265_RS03900at 920.257 kb on - strand, within CA265_RS03900at 920.286 kb on + strand, within CA265_RS03900at 920.286 kb on + strand, within CA265_RS03900at 920.286 kb on + strand, within CA265_RS03900at 920.287 kb on - strand, within CA265_RS03900at 920.363 kb on + strand, within CA265_RS03900at 920.393 kb on + strand, within CA265_RS03900at 920.405 kb on + strand, within CA265_RS03900at 920.637 kb on - strandat 920.697 kb on + strandat 920.711 kb on + strandat 920.718 kb on - strandat 920.718 kb on - strandat 920.718 kb on - strandat 920.741 kb on + strandat 920.760 kb on - strandat 920.771 kb on + strandat 920.811 kb on - strandat 920.816 kb on - strandat 920.944 kb on + strandat 920.945 kb on - strandat 920.947 kb on - strandat 920.951 kb on - strandat 920.951 kb on - strandat 920.988 kb on + strandat 921.037 kb on + strandat 921.070 kb on + strandat 921.070 kb on + strandat 921.071 kb on - strandat 921.096 kb on - strandat 921.254 kb on + strand, within CA265_RS03905at 921.281 kb on + strand, within CA265_RS03905at 921.281 kb on + strand, within CA265_RS03905at 921.310 kb on + strand, within CA265_RS03905at 921.311 kb on - strand, within CA265_RS03905at 921.311 kb on - strand, within CA265_RS03905at 921.311 kb on - strand, within CA265_RS03905at 921.312 kb on + strand, within CA265_RS03905at 921.316 kb on + strand, within CA265_RS03905at 921.317 kb on - strand, within CA265_RS03905at 921.322 kb on + strand, within CA265_RS03905at 921.323 kb on - strand, within CA265_RS03905at 921.360 kb on + strand, within CA265_RS03905at 921.361 kb on - strand, within CA265_RS03905at 921.361 kb on - strand, within CA265_RS03905at 921.364 kb on + strand, within CA265_RS03905at 921.365 kb on - strand, within CA265_RS03905at 921.449 kb on - strand, within CA265_RS03905at 921.481 kb on + strand, within CA265_RS03905at 921.482 kb on - strand, within CA265_RS03905at 921.521 kb on + strand, within CA265_RS03905at 921.663 kb on - strand, within CA265_RS03905at 921.687 kb on - strand, within CA265_RS03905at 921.687 kb on - strand, within CA265_RS03905at 921.733 kb on - strand, within CA265_RS03905at 921.842 kb on + strandat 921.974 kb on + strand, within CA265_RS03910at 921.978 kb on + strand, within CA265_RS03910at 922.102 kb on + strand, within CA265_RS03910at 922.112 kb on + strand, within CA265_RS03910at 922.126 kb on + strand, within CA265_RS03910at 922.127 kb on - strand, within CA265_RS03910at 922.170 kb on + strand, within CA265_RS03910at 922.170 kb on + strand, within CA265_RS03910at 922.171 kb on - strand, within CA265_RS03910at 922.201 kb on + strand, within CA265_RS03910at 922.202 kb on - strand, within CA265_RS03910at 922.206 kb on + strand, within CA265_RS03910at 922.206 kb on + strand, within CA265_RS03910at 922.355 kb on - strand, within CA265_RS03910at 922.394 kb on + strandat 922.395 kb on - strandat 922.396 kb on + strandat 922.423 kb on + strandat 922.443 kb on + strandat 922.449 kb on + strandat 922.450 kb on - strandat 922.612 kb on - strandat 922.670 kb on - strandat 922.711 kb on - strandat 922.713 kb on + strandat 922.728 kb on - strandat 922.761 kb on + strandat 922.822 kb on + strandat 922.823 kb on - strandat 922.823 kb on - strandat 922.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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920,076 + CA265_RS03900 0.45 -2.2
920,256 + CA265_RS03900 0.61 -0.7
920,256 + CA265_RS03900 0.61 -0.7
920,256 + CA265_RS03900 0.61 -1.3
920,257 - CA265_RS03900 0.61 -0.0
920,257 - CA265_RS03900 0.61 +0.5
920,286 + CA265_RS03900 0.64 -2.1
920,286 + CA265_RS03900 0.64 -1.1
920,286 + CA265_RS03900 0.64 -2.8
920,287 - CA265_RS03900 0.64 -0.2
920,363 + CA265_RS03900 0.70 -2.1
920,393 + CA265_RS03900 0.73 -1.8
920,405 + CA265_RS03900 0.74 -0.9
920,637 - -0.3
920,697 + -1.0
920,711 + -1.8
920,718 - -0.6
920,718 - -0.6
920,718 - -1.3
920,741 + +0.5
920,760 - +0.1
920,771 + +0.4
920,811 - -2.8
920,816 - -1.3
920,944 + -0.1
920,945 - +0.9
920,947 - +0.2
920,951 - -1.5
920,951 - -0.7
920,988 + -0.2
921,037 + -0.9
921,070 + -0.5
921,070 + -0.2
921,071 - +1.5
921,096 - +0.0
921,254 + CA265_RS03905 0.26 +0.1
921,281 + CA265_RS03905 0.30 -0.9
921,281 + CA265_RS03905 0.30 -1.0
921,310 + CA265_RS03905 0.33 -0.1
921,311 - CA265_RS03905 0.34 -0.0
921,311 - CA265_RS03905 0.34 -0.0
921,311 - CA265_RS03905 0.34 -0.4
921,312 + CA265_RS03905 0.34 +1.1
921,316 + CA265_RS03905 0.34 -0.6
921,317 - CA265_RS03905 0.34 -0.0
921,322 + CA265_RS03905 0.35 -0.4
921,323 - CA265_RS03905 0.35 -0.4
921,360 + CA265_RS03905 0.40 -1.8
921,361 - CA265_RS03905 0.40 +0.2
921,361 - CA265_RS03905 0.40 -0.4
921,364 + CA265_RS03905 0.40 -0.9
921,365 - CA265_RS03905 0.40 +0.1
921,449 - CA265_RS03905 0.51 +0.3
921,481 + CA265_RS03905 0.55 +0.2
921,482 - CA265_RS03905 0.55 -0.4
921,521 + CA265_RS03905 0.60 -1.5
921,663 - CA265_RS03905 0.78 +0.7
921,687 - CA265_RS03905 0.81 +0.3
921,687 - CA265_RS03905 0.81 +0.8
921,733 - CA265_RS03905 0.87 -0.3
921,842 + -0.6
921,974 + CA265_RS03910 0.22 -0.3
921,978 + CA265_RS03910 0.22 -0.0
922,102 + CA265_RS03910 0.44 -0.0
922,112 + CA265_RS03910 0.46 -0.5
922,126 + CA265_RS03910 0.48 +0.1
922,127 - CA265_RS03910 0.49 +0.5
922,170 + CA265_RS03910 0.56 -0.4
922,170 + CA265_RS03910 0.56 +0.2
922,171 - CA265_RS03910 0.56 -1.6
922,201 + CA265_RS03910 0.62 -0.6
922,202 - CA265_RS03910 0.62 +0.1
922,206 + CA265_RS03910 0.62 -0.1
922,206 + CA265_RS03910 0.62 -0.9
922,355 - CA265_RS03910 0.89 -2.4
922,394 + -1.6
922,395 - -0.7
922,396 + -0.1
922,423 + -1.5
922,443 + -0.2
922,449 + -0.1
922,450 - -1.8
922,612 - -0.6
922,670 - -1.5
922,711 - +0.8
922,713 + +0.2
922,728 - -0.6
922,761 + -0.9
922,822 + -1.0
922,823 - -0.8
922,823 - -1.3
922,829 + -0.3

Or see this region's nucleotide sequence