Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03610

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03600 and CA265_RS03605 are separated by 82 nucleotidesCA265_RS03605 and CA265_RS03610 are separated by 109 nucleotidesCA265_RS03610 and CA265_RS03615 are separated by 101 nucleotidesCA265_RS03615 and CA265_RS03620 are separated by 1 nucleotides CA265_RS03600: CA265_RS03600 - hypothetical protein, at 861,614 to 862,513 _RS03600 CA265_RS03605: CA265_RS03605 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase, at 862,596 to 863,198 _RS03605 CA265_RS03610: CA265_RS03610 - imidazole glycerol phosphate synthase subunit HisF, at 863,308 to 864,447 _RS03610 CA265_RS03615: CA265_RS03615 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 864,549 to 865,298 _RS03615 CA265_RS03620: CA265_RS03620 - imidazole glycerol phosphate synthase subunit HisH, at 865,300 to 865,932 _RS03620 Position (kb) 863 864 865Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 862.321 kb on + strand, within CA265_RS03600at 862.322 kb on - strand, within CA265_RS03600at 862.334 kb on + strandat 862.335 kb on - strand, within CA265_RS03600at 862.387 kb on + strand, within CA265_RS03600at 862.388 kb on - strand, within CA265_RS03600at 862.391 kb on + strand, within CA265_RS03600at 862.392 kb on - strand, within CA265_RS03600at 862.404 kb on - strand, within CA265_RS03600at 862.546 kb on + strandat 862.546 kb on + strandat 862.576 kb on - strandat 862.622 kb on + strandat 862.626 kb on + strandat 862.637 kb on + strandat 862.641 kb on + strandat 862.805 kb on + strand, within CA265_RS03605at 862.807 kb on + strand, within CA265_RS03605at 862.808 kb on - strand, within CA265_RS03605at 862.808 kb on - strand, within CA265_RS03605at 862.879 kb on + strand, within CA265_RS03605at 863.052 kb on + strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.053 kb on - strand, within CA265_RS03605at 863.110 kb on - strand, within CA265_RS03605at 863.151 kb on + strandat 863.186 kb on + strandat 863.186 kb on + strandat 863.187 kb on - strandat 863.187 kb on - strandat 863.239 kb on + strandat 863.271 kb on + strandat 863.303 kb on - strandat 863.307 kb on - strandat 863.311 kb on + strandat 863.500 kb on - strand, within CA265_RS03610at 863.500 kb on - strand, within CA265_RS03610at 863.575 kb on + strand, within CA265_RS03610at 863.684 kb on - strand, within CA265_RS03610at 863.786 kb on - strand, within CA265_RS03610at 863.788 kb on + strand, within CA265_RS03610at 863.865 kb on + strand, within CA265_RS03610at 863.866 kb on - strandat 863.907 kb on + strand, within CA265_RS03610at 863.987 kb on - strand, within CA265_RS03610at 864.055 kb on - strand, within CA265_RS03610at 864.057 kb on + strand, within CA265_RS03610at 864.168 kb on + strand, within CA265_RS03610at 864.214 kb on - strand, within CA265_RS03610at 864.300 kb on + strand, within CA265_RS03610at 864.313 kb on - strand, within CA265_RS03610at 864.352 kb on - strandat 864.490 kb on + strandat 864.584 kb on + strandat 864.631 kb on - strand, within CA265_RS03615at 864.633 kb on + strand, within CA265_RS03615at 864.633 kb on + strand, within CA265_RS03615at 864.708 kb on - strand, within CA265_RS03615at 864.782 kb on + strand, within CA265_RS03615at 864.788 kb on + strand, within CA265_RS03615at 864.789 kb on - strand, within CA265_RS03615at 864.792 kb on + strand, within CA265_RS03615at 864.879 kb on + strand, within CA265_RS03615at 864.915 kb on - strand, within CA265_RS03615at 864.992 kb on + strand, within CA265_RS03615at 865.044 kb on + strand, within CA265_RS03615at 865.121 kb on + strand, within CA265_RS03615at 865.143 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.154 kb on + strand, within CA265_RS03615at 865.184 kb on - strand, within CA265_RS03615at 865.216 kb on + strand, within CA265_RS03615at 865.281 kb on - strandat 865.290 kb on + strandat 865.291 kb on - strandat 865.291 kb on - strandat 865.291 kb on - strandat 865.295 kb on - strandat 865.302 kb on - strandat 865.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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862,321 + CA265_RS03600 0.79 -3.3
862,322 - CA265_RS03600 0.79 -2.9
862,334 + -0.0
862,335 - CA265_RS03600 0.80 -3.1
862,387 + CA265_RS03600 0.86 -4.2
862,388 - CA265_RS03600 0.86 -3.6
862,391 + CA265_RS03600 0.86 -1.9
862,392 - CA265_RS03600 0.86 -3.4
862,404 - CA265_RS03600 0.88 -2.3
862,546 + -1.0
862,546 + -0.5
862,576 - -1.1
862,622 + -4.8
862,626 + -3.9
862,637 + -2.8
862,641 + -5.2
862,805 + CA265_RS03605 0.35 -2.3
862,807 + CA265_RS03605 0.35 -4.2
862,808 - CA265_RS03605 0.35 -4.0
862,808 - CA265_RS03605 0.35 -2.0
862,879 + CA265_RS03605 0.47 -0.4
863,052 + CA265_RS03605 0.76 -1.2
863,053 - CA265_RS03605 0.76 -4.7
863,053 - CA265_RS03605 0.76 -2.5
863,053 - CA265_RS03605 0.76 -4.5
863,110 - CA265_RS03605 0.85 -0.4
863,151 + -2.9
863,186 + -3.9
863,186 + -2.0
863,187 - -2.0
863,187 - -2.0
863,239 + -5.3
863,271 + -2.1
863,303 - -1.2
863,307 - -2.7
863,311 + -4.6
863,500 - CA265_RS03610 0.17 -2.5
863,500 - CA265_RS03610 0.17 -5.1
863,575 + CA265_RS03610 0.23 -3.6
863,684 - CA265_RS03610 0.33 -1.9
863,786 - CA265_RS03610 0.42 -2.9
863,788 + CA265_RS03610 0.42 -2.0
863,865 + CA265_RS03610 0.49 -0.7
863,866 - -0.4
863,907 + CA265_RS03610 0.53 -0.6
863,987 - CA265_RS03610 0.60 -2.2
864,055 - CA265_RS03610 0.66 -3.6
864,057 + CA265_RS03610 0.66 -4.2
864,168 + CA265_RS03610 0.75 -1.5
864,214 - CA265_RS03610 0.79 -2.8
864,300 + CA265_RS03610 0.87 -4.4
864,313 - CA265_RS03610 0.88 -0.9
864,352 - -0.8
864,490 + -3.5
864,584 + -4.1
864,631 - CA265_RS03615 0.11 -2.2
864,633 + CA265_RS03615 0.11 -3.0
864,633 + CA265_RS03615 0.11 -4.2
864,708 - CA265_RS03615 0.21 -3.7
864,782 + CA265_RS03615 0.31 -2.1
864,788 + CA265_RS03615 0.32 -3.0
864,789 - CA265_RS03615 0.32 -0.7
864,792 + CA265_RS03615 0.32 -4.4
864,879 + CA265_RS03615 0.44 -2.0
864,915 - CA265_RS03615 0.49 -2.7
864,992 + CA265_RS03615 0.59 -3.0
865,044 + CA265_RS03615 0.66 -3.8
865,121 + CA265_RS03615 0.76 -3.3
865,143 + CA265_RS03615 0.79 -5.3
865,154 + CA265_RS03615 0.81 -5.3
865,154 + CA265_RS03615 0.81 -2.3
865,154 + CA265_RS03615 0.81 -4.0
865,154 + CA265_RS03615 0.81 -5.0
865,184 - CA265_RS03615 0.85 -1.6
865,216 + CA265_RS03615 0.89 -2.9
865,281 - -2.8
865,290 + -5.1
865,291 - -4.1
865,291 - -4.1
865,291 - -5.1
865,295 - -2.9
865,302 - -0.6
865,302 - -1.0

Or see this region's nucleotide sequence