Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03595 and CA265_RS03600 are separated by 107 nucleotides CA265_RS03600 and CA265_RS03605 are separated by 82 nucleotides CA265_RS03605 and CA265_RS03610 are separated by 109 nucleotides
CA265_RS03595: CA265_RS03595 - hydrolase, at 860,721 to 861,506
_RS03595
CA265_RS03600: CA265_RS03600 - hypothetical protein, at 861,614 to 862,513
_RS03600
CA265_RS03605: CA265_RS03605 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase, at 862,596 to 863,198
_RS03605
CA265_RS03610: CA265_RS03610 - imidazole glycerol phosphate synthase subunit HisF, at 863,308 to 864,447
_RS03610
Position (kb) 861
862
863 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 860.619 kb on + strand at 860.682 kb on - strand at 860.682 kb on - strand at 860.718 kb on + strand at 860.718 kb on + strand at 860.719 kb on - strand at 860.756 kb on - strand at 860.756 kb on - strand at 860.824 kb on + strand, within CA265_RS03595 at 860.831 kb on + strand, within CA265_RS03595 at 861.080 kb on + strand, within CA265_RS03595 at 861.099 kb on + strand, within CA265_RS03595 at 861.169 kb on - strand, within CA265_RS03595 at 861.200 kb on - strand, within CA265_RS03595 at 861.245 kb on + strand, within CA265_RS03595 at 861.246 kb on - strand, within CA265_RS03595 at 861.371 kb on + strand, within CA265_RS03595 at 861.449 kb on + strand at 861.450 kb on - strand at 861.486 kb on - strand at 861.504 kb on + strand at 861.504 kb on + strand at 861.505 kb on - strand at 861.507 kb on + strand at 861.551 kb on - strand at 861.551 kb on - strand at 861.554 kb on - strand at 861.603 kb on + strand at 861.607 kb on - strand at 861.886 kb on - strand, within CA265_RS03600 at 861.908 kb on + strand, within CA265_RS03600 at 861.939 kb on + strand, within CA265_RS03600 at 861.940 kb on - strand, within CA265_RS03600 at 861.940 kb on - strand, within CA265_RS03600 at 861.970 kb on + strand, within CA265_RS03600 at 862.004 kb on + strand, within CA265_RS03600 at 862.048 kb on + strand, within CA265_RS03600 at 862.049 kb on - strand, within CA265_RS03600 at 862.049 kb on - strand, within CA265_RS03600 at 862.075 kb on + strand, within CA265_RS03600 at 862.107 kb on + strand, within CA265_RS03600 at 862.214 kb on + strand, within CA265_RS03600 at 862.214 kb on + strand, within CA265_RS03600 at 862.297 kb on + strand, within CA265_RS03600 at 862.321 kb on + strand, within CA265_RS03600 at 862.322 kb on - strand, within CA265_RS03600 at 862.334 kb on + strand at 862.335 kb on - strand, within CA265_RS03600 at 862.387 kb on + strand, within CA265_RS03600 at 862.388 kb on - strand, within CA265_RS03600 at 862.391 kb on + strand, within CA265_RS03600 at 862.392 kb on - strand, within CA265_RS03600 at 862.404 kb on - strand, within CA265_RS03600 at 862.546 kb on + strand at 862.546 kb on + strand at 862.576 kb on - strand at 862.622 kb on + strand at 862.626 kb on + strand at 862.637 kb on + strand at 862.641 kb on + strand at 862.805 kb on + strand, within CA265_RS03605 at 862.807 kb on + strand, within CA265_RS03605 at 862.808 kb on - strand, within CA265_RS03605 at 862.808 kb on - strand, within CA265_RS03605 at 862.879 kb on + strand, within CA265_RS03605 at 863.052 kb on + strand, within CA265_RS03605 at 863.053 kb on - strand, within CA265_RS03605 at 863.053 kb on - strand, within CA265_RS03605 at 863.053 kb on - strand, within CA265_RS03605 at 863.110 kb on - strand, within CA265_RS03605 at 863.151 kb on + strand at 863.186 kb on + strand at 863.186 kb on + strand at 863.187 kb on - strand at 863.187 kb on - strand at 863.239 kb on + strand at 863.271 kb on + strand at 863.303 kb on - strand at 863.307 kb on - strand at 863.311 kb on + strand at 863.500 kb on - strand, within CA265_RS03610 at 863.500 kb on - strand, within CA265_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 860,619 + -0.2 860,682 - -1.3 860,682 - -0.3 860,718 + -1.4 860,718 + -1.1 860,719 - -1.4 860,756 - -2.0 860,756 - -1.2 860,824 + CA265_RS03595 0.13 -1.2 860,831 + CA265_RS03595 0.14 -2.2 861,080 + CA265_RS03595 0.46 -2.5 861,099 + CA265_RS03595 0.48 -2.8 861,169 - CA265_RS03595 0.57 -0.4 861,200 - CA265_RS03595 0.61 -0.2 861,245 + CA265_RS03595 0.67 -3.0 861,246 - CA265_RS03595 0.67 -1.9 861,371 + CA265_RS03595 0.83 -1.2 861,449 + -2.6 861,450 - -0.8 861,486 - -0.8 861,504 + -1.1 861,504 + +0.6 861,505 - +1.1 861,507 + +0.1 861,551 - +0.3 861,551 - +0.2 861,554 - -1.0 861,603 + -0.4 861,607 - -0.0 861,886 - CA265_RS03600 0.30 -1.3 861,908 + CA265_RS03600 0.33 -2.0 861,939 + CA265_RS03600 0.36 -3.7 861,940 - CA265_RS03600 0.36 -2.6 861,940 - CA265_RS03600 0.36 -3.5 861,970 + CA265_RS03600 0.40 -2.4 862,004 + CA265_RS03600 0.43 -4.4 862,048 + CA265_RS03600 0.48 -1.9 862,049 - CA265_RS03600 0.48 -2.7 862,049 - CA265_RS03600 0.48 -3.5 862,075 + CA265_RS03600 0.51 -3.9 862,107 + CA265_RS03600 0.55 -1.0 862,214 + CA265_RS03600 0.67 -4.2 862,214 + CA265_RS03600 0.67 -2.1 862,297 + CA265_RS03600 0.76 -2.7 862,321 + CA265_RS03600 0.79 -3.3 862,322 - CA265_RS03600 0.79 -2.9 862,334 + -0.0 862,335 - CA265_RS03600 0.80 -3.1 862,387 + CA265_RS03600 0.86 -4.2 862,388 - CA265_RS03600 0.86 -3.6 862,391 + CA265_RS03600 0.86 -1.9 862,392 - CA265_RS03600 0.86 -3.4 862,404 - CA265_RS03600 0.88 -2.3 862,546 + -1.0 862,546 + -0.5 862,576 - -1.1 862,622 + -4.8 862,626 + -3.9 862,637 + -2.8 862,641 + -5.2 862,805 + CA265_RS03605 0.35 -2.3 862,807 + CA265_RS03605 0.35 -4.2 862,808 - CA265_RS03605 0.35 -4.0 862,808 - CA265_RS03605 0.35 -2.0 862,879 + CA265_RS03605 0.47 -0.4 863,052 + CA265_RS03605 0.76 -1.2 863,053 - CA265_RS03605 0.76 -4.7 863,053 - CA265_RS03605 0.76 -2.5 863,053 - CA265_RS03605 0.76 -4.5 863,110 - CA265_RS03605 0.85 -0.4 863,151 + -2.9 863,186 + -3.9 863,186 + -2.0 863,187 - -2.0 863,187 - -2.0 863,239 + -5.3 863,271 + -2.1 863,303 - -1.2 863,307 - -2.7 863,311 + -4.6 863,500 - CA265_RS03610 0.17 -2.5 863,500 - CA265_RS03610 0.17 -5.1
Or see this region's nucleotide sequence