Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03575 and CA265_RS03580 are separated by 78 nucleotides CA265_RS03580 and CA265_RS03585 are separated by 78 nucleotides CA265_RS03585 and CA265_RS03590 are separated by 323 nucleotides
CA265_RS03575: CA265_RS03575 - hypothetical protein, at 856,361 to 858,310
_RS03575
CA265_RS03580: CA265_RS03580 - acyl-CoA reductase, at 858,389 to 859,405
_RS03580
CA265_RS03585: CA265_RS03585 - ferredoxin, at 859,484 to 859,834
_RS03585
CA265_RS03590: CA265_RS03590 - universal stress protein, at 860,158 to 860,610
_RS03590
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.395 kb on + strand, within CA265_RS03575 at 857.401 kb on + strand, within CA265_RS03575 at 857.402 kb on - strand, within CA265_RS03575 at 857.405 kb on + strand, within CA265_RS03575 at 857.517 kb on + strand, within CA265_RS03575 at 857.572 kb on + strand, within CA265_RS03575 at 857.588 kb on - strand, within CA265_RS03575 at 857.588 kb on - strand, within CA265_RS03575 at 857.645 kb on + strand, within CA265_RS03575 at 857.645 kb on + strand, within CA265_RS03575 at 857.646 kb on - strand, within CA265_RS03575 at 857.680 kb on + strand, within CA265_RS03575 at 857.709 kb on - strand, within CA265_RS03575 at 857.709 kb on - strand, within CA265_RS03575 at 857.751 kb on + strand, within CA265_RS03575 at 857.751 kb on + strand, within CA265_RS03575 at 857.804 kb on + strand, within CA265_RS03575 at 857.880 kb on - strand, within CA265_RS03575 at 857.972 kb on + strand, within CA265_RS03575 at 858.050 kb on - strand, within CA265_RS03575 at 858.050 kb on - strand, within CA265_RS03575 at 858.087 kb on - strand, within CA265_RS03575 at 858.092 kb on - strand, within CA265_RS03575 at 858.101 kb on + strand, within CA265_RS03575 at 858.127 kb on + strand at 858.129 kb on + strand at 858.129 kb on + strand at 858.133 kb on + strand at 858.150 kb on + strand at 858.150 kb on + strand at 858.151 kb on - strand at 858.151 kb on - strand at 858.176 kb on - strand at 858.181 kb on + strand at 858.184 kb on + strand at 858.277 kb on + strand at 858.278 kb on - strand at 858.288 kb on - strand at 858.313 kb on - strand at 858.334 kb on - strand at 858.337 kb on - strand at 858.341 kb on - strand at 858.367 kb on + strand at 858.388 kb on - strand at 858.418 kb on + strand at 858.419 kb on - strand at 858.422 kb on + strand at 858.503 kb on + strand, within CA265_RS03580 at 858.682 kb on - strand, within CA265_RS03580 at 858.692 kb on - strand, within CA265_RS03580 at 858.694 kb on + strand, within CA265_RS03580 at 858.694 kb on + strand, within CA265_RS03580 at 858.703 kb on + strand, within CA265_RS03580 at 858.715 kb on + strand, within CA265_RS03580 at 858.757 kb on + strand, within CA265_RS03580 at 858.757 kb on + strand, within CA265_RS03580 at 858.757 kb on + strand, within CA265_RS03580 at 858.758 kb on - strand, within CA265_RS03580 at 858.870 kb on - strand, within CA265_RS03580 at 858.870 kb on - strand, within CA265_RS03580 at 859.116 kb on - strand, within CA265_RS03580 at 859.121 kb on + strand, within CA265_RS03580 at 859.236 kb on - strand, within CA265_RS03580 at 859.236 kb on - strand, within CA265_RS03580 at 859.328 kb on + strand at 859.841 kb on - strand at 859.964 kb on - strand at 859.964 kb on - strand at 859.990 kb on + strand at 859.990 kb on + strand at 860.023 kb on + strand at 860.024 kb on - strand at 860.083 kb on + strand at 860.136 kb on + strand at 860.137 kb on - strand at 860.159 kb on + strand at 860.209 kb on - strand, within CA265_RS03590 at 860.209 kb on - strand, within CA265_RS03590 at 860.316 kb on + strand, within CA265_RS03590 at 860.344 kb on - strand, within CA265_RS03590 at 860.347 kb on + strand, within CA265_RS03590 at 860.348 kb on - strand, within CA265_RS03590 at 860.348 kb on - strand, within CA265_RS03590 at 860.351 kb on + strand, within CA265_RS03590 at 860.371 kb on - strand, within CA265_RS03590 at 860.403 kb on + strand, within CA265_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 857,395 + CA265_RS03575 0.53 -2.0 857,401 + CA265_RS03575 0.53 -0.9 857,402 - CA265_RS03575 0.53 -0.5 857,405 + CA265_RS03575 0.54 -0.9 857,517 + CA265_RS03575 0.59 +0.5 857,572 + CA265_RS03575 0.62 -0.3 857,588 - CA265_RS03575 0.63 -0.3 857,588 - CA265_RS03575 0.63 -0.3 857,645 + CA265_RS03575 0.66 -1.5 857,645 + CA265_RS03575 0.66 -0.6 857,646 - CA265_RS03575 0.66 -2.1 857,680 + CA265_RS03575 0.68 -0.8 857,709 - CA265_RS03575 0.69 -1.3 857,709 - CA265_RS03575 0.69 -0.7 857,751 + CA265_RS03575 0.71 -0.7 857,751 + CA265_RS03575 0.71 -0.3 857,804 + CA265_RS03575 0.74 +0.3 857,880 - CA265_RS03575 0.78 -0.0 857,972 + CA265_RS03575 0.83 -0.5 858,050 - CA265_RS03575 0.87 -1.2 858,050 - CA265_RS03575 0.87 -0.8 858,087 - CA265_RS03575 0.89 -0.8 858,092 - CA265_RS03575 0.89 -1.1 858,101 + CA265_RS03575 0.89 +0.2 858,127 + +0.0 858,129 + +0.9 858,129 + -1.0 858,133 + -1.3 858,150 + -0.4 858,150 + +0.2 858,151 - -0.9 858,151 - +2.4 858,176 - -1.3 858,181 + -0.5 858,184 + +0.2 858,277 + +0.6 858,278 - -0.3 858,288 - +1.7 858,313 - -0.0 858,334 - -1.6 858,337 - -0.2 858,341 - -0.5 858,367 + +0.0 858,388 - -0.0 858,418 + -3.4 858,419 - -2.7 858,422 + -2.4 858,503 + CA265_RS03580 0.11 -0.7 858,682 - CA265_RS03580 0.29 +1.5 858,692 - CA265_RS03580 0.30 -2.5 858,694 + CA265_RS03580 0.30 -2.1 858,694 + CA265_RS03580 0.30 -1.1 858,703 + CA265_RS03580 0.31 -1.3 858,715 + CA265_RS03580 0.32 -1.9 858,757 + CA265_RS03580 0.36 -2.3 858,757 + CA265_RS03580 0.36 -2.7 858,757 + CA265_RS03580 0.36 -1.4 858,758 - CA265_RS03580 0.36 -0.5 858,870 - CA265_RS03580 0.47 -2.0 858,870 - CA265_RS03580 0.47 -1.8 859,116 - CA265_RS03580 0.71 -3.0 859,121 + CA265_RS03580 0.72 -2.7 859,236 - CA265_RS03580 0.83 -3.5 859,236 - CA265_RS03580 0.83 -1.3 859,328 + -2.2 859,841 - -0.9 859,964 - -0.3 859,964 - -0.4 859,990 + -0.5 859,990 + +0.2 860,023 + -1.1 860,024 - -0.1 860,083 + +1.0 860,136 + +0.4 860,137 - +0.7 860,159 + +0.2 860,209 - CA265_RS03590 0.11 +0.1 860,209 - CA265_RS03590 0.11 -0.0 860,316 + CA265_RS03590 0.35 +0.6 860,344 - CA265_RS03590 0.41 -0.6 860,347 + CA265_RS03590 0.42 -0.1 860,348 - CA265_RS03590 0.42 -0.5 860,348 - CA265_RS03590 0.42 -0.7 860,351 + CA265_RS03590 0.43 -0.9 860,371 - CA265_RS03590 0.47 +0.6 860,403 + CA265_RS03590 0.54 +0.5
Or see this region's nucleotide sequence