Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03285 and CA265_RS03290 are separated by 246 nucleotides CA265_RS03290 and CA265_RS03295 overlap by 1 nucleotides CA265_RS03295 and CA265_RS03300 are separated by 33 nucleotides
CA265_RS03285: CA265_RS03285 - hypothetical protein, at 802,630 to 803,361
_RS03285
CA265_RS03290: CA265_RS03290 - gliding motility-associated ABC transporter permease subunit GldF, at 803,608 to 804,333
_RS03290
CA265_RS03295: CA265_RS03295 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 804,333 to 806,018
_RS03295
CA265_RS03300: CA265_RS03300 - DNA polymerase III subunit beta, at 806,052 to 807,176
_RS03300
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2 at 803.333 kb on + strand at 803.334 kb on - strand at 803.379 kb on + strand at 803.380 kb on - strand at 803.388 kb on - strand at 803.388 kb on - strand at 803.390 kb on - strand at 803.392 kb on + strand at 803.395 kb on - strand at 803.395 kb on - strand at 803.454 kb on + strand at 803.455 kb on - strand at 803.458 kb on + strand at 803.458 kb on + strand at 803.459 kb on - strand at 803.491 kb on - strand at 803.491 kb on - strand at 803.495 kb on - strand at 803.496 kb on + strand at 803.499 kb on + strand at 803.577 kb on + strand at 803.578 kb on - strand at 803.599 kb on + strand at 803.600 kb on - strand at 803.611 kb on + strand at 803.663 kb on - strand at 803.665 kb on - strand at 803.730 kb on - strand, within CA265_RS03290 at 803.730 kb on - strand, within CA265_RS03290 at 803.738 kb on - strand, within CA265_RS03290 at 803.738 kb on - strand, within CA265_RS03290 at 803.848 kb on + strand, within CA265_RS03290 at 803.849 kb on - strand, within CA265_RS03290 at 803.858 kb on + strand, within CA265_RS03290 at 803.927 kb on + strand, within CA265_RS03290 at 803.928 kb on - strand, within CA265_RS03290 at 803.937 kb on - strand, within CA265_RS03290 at 803.953 kb on + strand, within CA265_RS03290 at 803.959 kb on + strand, within CA265_RS03290 at 804.155 kb on - strand, within CA265_RS03290 at 804.224 kb on - strand, within CA265_RS03290 at 804.224 kb on - strand, within CA265_RS03290 at 804.249 kb on - strand, within CA265_RS03290 at 804.265 kb on - strand at 804.268 kb on + strand at 804.317 kb on + strand at 804.371 kb on + strand at 804.449 kb on + strand at 804.449 kb on + strand at 804.507 kb on - strand, within CA265_RS03295 at 804.609 kb on - strand, within CA265_RS03295 at 804.692 kb on - strand, within CA265_RS03295 at 804.837 kb on - strand, within CA265_RS03295 at 804.837 kb on - strand, within CA265_RS03295 at 804.839 kb on - strand, within CA265_RS03295 at 804.867 kb on - strand, within CA265_RS03295 at 804.892 kb on + strand, within CA265_RS03295 at 804.906 kb on - strand, within CA265_RS03295 at 804.915 kb on - strand, within CA265_RS03295 at 804.991 kb on - strand, within CA265_RS03295 at 805.017 kb on - strand, within CA265_RS03295 at 805.020 kb on - strand, within CA265_RS03295 at 805.020 kb on - strand, within CA265_RS03295 at 805.083 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.212 kb on - strand, within CA265_RS03295 at 805.229 kb on + strand, within CA265_RS03295 at 805.230 kb on - strand, within CA265_RS03295 at 805.243 kb on - strand, within CA265_RS03295 at 805.257 kb on - strand, within CA265_RS03295 at 805.260 kb on + strand, within CA265_RS03295 at 805.315 kb on + strand, within CA265_RS03295 at 805.316 kb on - strand, within CA265_RS03295 at 805.384 kb on + strand, within CA265_RS03295 at 805.434 kb on - strand, within CA265_RS03295 at 805.439 kb on - strand, within CA265_RS03295 at 805.443 kb on - strand, within CA265_RS03295 at 805.500 kb on - strand, within CA265_RS03295 at 805.506 kb on + strand, within CA265_RS03295 at 805.508 kb on + strand, within CA265_RS03295 at 805.508 kb on + strand, within CA265_RS03295 at 805.509 kb on - strand, within CA265_RS03295 at 805.509 kb on - strand, within CA265_RS03295 at 805.553 kb on - strand, within CA265_RS03295 at 805.652 kb on + strand, within CA265_RS03295 at 805.683 kb on - strand, within CA265_RS03295 at 805.703 kb on - strand, within CA265_RS03295 at 805.790 kb on + strand, within CA265_RS03295 at 805.791 kb on - strand, within CA265_RS03295 at 805.791 kb on - strand, within CA265_RS03295 at 805.791 kb on - strand, within CA265_RS03295 at 805.802 kb on + strand, within CA265_RS03295 at 805.821 kb on - strand, within CA265_RS03295 at 805.830 kb on + strand, within CA265_RS03295 at 805.934 kb on + strand at 805.942 kb on + strand at 805.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 803,333 + +0.2 803,334 - +0.9 803,379 + -0.6 803,380 - +1.0 803,388 - +0.8 803,388 - +1.0 803,390 - +0.5 803,392 + +0.4 803,395 - -2.5 803,395 - -0.1 803,454 + +0.2 803,455 - +0.8 803,458 + -0.5 803,458 + -0.2 803,459 - +0.3 803,491 - -0.5 803,491 - +0.4 803,495 - -1.2 803,496 + +0.4 803,499 + -0.1 803,577 + +0.7 803,578 - -0.8 803,599 + +0.6 803,600 - +0.6 803,611 + +0.5 803,663 - -0.5 803,665 - +0.1 803,730 - CA265_RS03290 0.17 +0.1 803,730 - CA265_RS03290 0.17 +0.2 803,738 - CA265_RS03290 0.18 +0.6 803,738 - CA265_RS03290 0.18 -0.6 803,848 + CA265_RS03290 0.33 +0.9 803,849 - CA265_RS03290 0.33 -0.4 803,858 + CA265_RS03290 0.34 +1.5 803,927 + CA265_RS03290 0.44 +0.1 803,928 - CA265_RS03290 0.44 +0.4 803,937 - CA265_RS03290 0.45 -0.2 803,953 + CA265_RS03290 0.48 +0.7 803,959 + CA265_RS03290 0.48 +0.9 804,155 - CA265_RS03290 0.75 +0.4 804,224 - CA265_RS03290 0.85 +0.6 804,224 - CA265_RS03290 0.85 +0.4 804,249 - CA265_RS03290 0.88 -0.7 804,265 - -0.7 804,268 + +1.0 804,317 + -0.2 804,371 + -0.7 804,449 + +0.2 804,449 + -0.1 804,507 - CA265_RS03295 0.10 +0.2 804,609 - CA265_RS03295 0.16 +0.4 804,692 - CA265_RS03295 0.21 -1.6 804,837 - CA265_RS03295 0.30 +0.6 804,837 - CA265_RS03295 0.30 +0.7 804,839 - CA265_RS03295 0.30 +2.0 804,867 - CA265_RS03295 0.32 +0.6 804,892 + CA265_RS03295 0.33 +2.3 804,906 - CA265_RS03295 0.34 +0.2 804,915 - CA265_RS03295 0.35 +1.1 804,991 - CA265_RS03295 0.39 +1.9 805,017 - CA265_RS03295 0.41 -0.6 805,020 - CA265_RS03295 0.41 +1.1 805,020 - CA265_RS03295 0.41 +2.3 805,083 - CA265_RS03295 0.44 -0.2 805,157 - CA265_RS03295 0.49 +0.6 805,157 - CA265_RS03295 0.49 -0.1 805,157 - CA265_RS03295 0.49 +0.1 805,212 - CA265_RS03295 0.52 +1.1 805,229 + CA265_RS03295 0.53 +0.7 805,230 - CA265_RS03295 0.53 +0.3 805,243 - CA265_RS03295 0.54 +0.1 805,257 - CA265_RS03295 0.55 +0.6 805,260 + CA265_RS03295 0.55 +0.7 805,315 + CA265_RS03295 0.58 +0.5 805,316 - CA265_RS03295 0.58 +1.1 805,384 + CA265_RS03295 0.62 +1.3 805,434 - CA265_RS03295 0.65 +1.6 805,439 - CA265_RS03295 0.66 +1.5 805,443 - CA265_RS03295 0.66 +0.2 805,500 - CA265_RS03295 0.69 +1.4 805,506 + CA265_RS03295 0.70 +0.8 805,508 + CA265_RS03295 0.70 +0.8 805,508 + CA265_RS03295 0.70 +0.6 805,509 - CA265_RS03295 0.70 +0.5 805,509 - CA265_RS03295 0.70 +1.0 805,553 - CA265_RS03295 0.72 +1.0 805,652 + CA265_RS03295 0.78 +1.1 805,683 - CA265_RS03295 0.80 +0.5 805,703 - CA265_RS03295 0.81 +0.6 805,790 + CA265_RS03295 0.86 +2.0 805,791 - CA265_RS03295 0.86 +0.1 805,791 - CA265_RS03295 0.86 +1.5 805,791 - CA265_RS03295 0.86 +0.4 805,802 + CA265_RS03295 0.87 +0.6 805,821 - CA265_RS03295 0.88 +0.4 805,830 + CA265_RS03295 0.89 +0.1 805,934 + +1.4 805,942 + +0.6 805,964 - +1.3
Or see this region's nucleotide sequence