Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02865 and CA265_RS02870 are separated by 82 nucleotides CA265_RS02870 and CA265_RS02875 are separated by 109 nucleotides CA265_RS02875 and CA265_RS02880 are separated by 9 nucleotides CA265_RS02880 and CA265_RS02885 are separated by 375 nucleotides CA265_RS02885 and CA265_RS02890 are separated by 2 nucleotides
CA265_RS02865: CA265_RS02865 - elongation factor Tu, at 714,719 to 715,906
_RS02865
CA265_RS02870: CA265_RS02870 - tRNA-Trp, at 715,989 to 716,059
_RS02870
CA265_RS02875: CA265_RS02875 - preprotein translocase subunit SecE, at 716,169 to 716,366
_RS02875
CA265_RS02880: CA265_RS02880 - transcription termination/antitermination factor NusG, at 716,376 to 716,915
_RS02880
CA265_RS02885: CA265_RS02885 - hypothetical protein, at 717,291 to 717,800
_RS02885
CA265_RS02890: CA265_RS02890 - hypothetical protein, at 717,803 to 718,321
_RS02890
Position (kb) 716
717 Strain fitness (log2 ratio) -2
-1
0
1 at 717.027 kb on - strand at 717.053 kb on - strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.057 kb on - strand at 717.074 kb on - strand at 717.083 kb on + strand at 717.124 kb on + strand at 717.124 kb on + strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885 at 717.402 kb on - strand, within CA265_RS02885 at 717.407 kb on + strand, within CA265_RS02885 at 717.407 kb on + strand, within CA265_RS02885 at 717.408 kb on - strand, within CA265_RS02885 at 717.429 kb on - strand, within CA265_RS02885 at 717.502 kb on + strand, within CA265_RS02885 at 717.503 kb on - strand, within CA265_RS02885 at 717.540 kb on + strand, within CA265_RS02885 at 717.542 kb on + strand, within CA265_RS02885 at 717.542 kb on + strand, within CA265_RS02885 at 717.574 kb on + strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.575 kb on - strand, within CA265_RS02885 at 717.601 kb on - strand, within CA265_RS02885 at 717.610 kb on - strand, within CA265_RS02885 at 717.616 kb on + strand, within CA265_RS02885 at 717.616 kb on + strand, within CA265_RS02885 at 717.663 kb on - strand, within CA265_RS02885 at 717.663 kb on - strand, within CA265_RS02885 at 717.664 kb on + strand, within CA265_RS02885 at 717.774 kb on - strand at 717.834 kb on + strand at 717.865 kb on - strand, within CA265_RS02890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 717,027 - -0.8 717,053 - +1.5 717,056 + -0.7 717,056 + +0.2 717,056 + -0.2 717,057 - -1.3 717,074 - -0.1 717,083 + +0.0 717,124 + -0.9 717,124 + +1.6 717,136 - -0.5 717,136 - -0.4 717,136 - +0.1 717,274 - -0.5 717,274 - -0.8 717,274 - +1.2 717,346 + CA265_RS02885 0.11 +0.2 717,346 + CA265_RS02885 0.11 +0.5 717,346 + CA265_RS02885 0.11 -0.2 717,349 + CA265_RS02885 0.11 -0.7 717,349 + CA265_RS02885 0.11 -0.9 717,402 - CA265_RS02885 0.22 +0.7 717,407 + CA265_RS02885 0.23 -1.1 717,407 + CA265_RS02885 0.23 -1.0 717,408 - CA265_RS02885 0.23 +0.7 717,429 - CA265_RS02885 0.27 +0.0 717,502 + CA265_RS02885 0.41 -0.4 717,503 - CA265_RS02885 0.42 -0.5 717,540 + CA265_RS02885 0.49 -0.2 717,542 + CA265_RS02885 0.49 +0.2 717,542 + CA265_RS02885 0.49 -0.1 717,574 + CA265_RS02885 0.55 +0.4 717,575 - CA265_RS02885 0.56 +0.4 717,575 - CA265_RS02885 0.56 -0.9 717,575 - CA265_RS02885 0.56 +0.6 717,601 - CA265_RS02885 0.61 -0.1 717,610 - CA265_RS02885 0.63 +0.1 717,616 + CA265_RS02885 0.64 -2.1 717,616 + CA265_RS02885 0.64 -0.6 717,663 - CA265_RS02885 0.73 +1.5 717,663 - CA265_RS02885 0.73 +0.1 717,664 + CA265_RS02885 0.73 -0.1 717,774 - +1.0 717,834 + -0.3 717,865 - CA265_RS02890 0.12 +0.5
Or see this region's nucleotide sequence