Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02295 and CA265_RS02300 are separated by 6 nucleotides CA265_RS02300 and CA265_RS02305 are separated by 92 nucleotides CA265_RS02305 and CA265_RS02310 are separated by 359 nucleotides CA265_RS02310 and CA265_RS02315 are separated by 239 nucleotides
CA265_RS02295: CA265_RS02295 - metal-binding protein, at 573,706 to 573,954
_RS02295
CA265_RS02300: CA265_RS02300 - cysteine methyltransferase, at 573,961 to 574,800
_RS02300
CA265_RS02305: CA265_RS02305 - hypothetical protein, at 574,893 to 575,429
_RS02305
CA265_RS02310: CA265_RS02310 - hypothetical protein, at 575,789 to 576,154
_RS02310
CA265_RS02315: CA265_RS02315 - single-stranded DNA-binding protein, at 576,394 to 576,741
_RS02315
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1 at 574.051 kb on + strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.108 kb on + strand, within CA265_RS02300 at 574.126 kb on - strand, within CA265_RS02300 at 574.131 kb on + strand, within CA265_RS02300 at 574.157 kb on + strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.228 kb on + strand, within CA265_RS02300 at 574.240 kb on - strand, within CA265_RS02300 at 574.277 kb on + strand, within CA265_RS02300 at 574.278 kb on - strand, within CA265_RS02300 at 574.299 kb on + strand, within CA265_RS02300 at 574.306 kb on + strand, within CA265_RS02300 at 574.307 kb on - strand, within CA265_RS02300 at 574.605 kb on - strand, within CA265_RS02300 at 574.614 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.641 kb on + strand, within CA265_RS02300 at 574.687 kb on + strand, within CA265_RS02300 at 574.714 kb on + strand, within CA265_RS02300 at 574.811 kb on - strand at 574.816 kb on - strand at 574.898 kb on + strand at 574.970 kb on - strand, within CA265_RS02305 at 575.052 kb on - strand, within CA265_RS02305 at 575.059 kb on - strand, within CA265_RS02305 at 575.081 kb on + strand, within CA265_RS02305 at 575.081 kb on + strand, within CA265_RS02305 at 575.089 kb on - strand, within CA265_RS02305 at 575.111 kb on + strand, within CA265_RS02305 at 575.146 kb on - strand, within CA265_RS02305 at 575.190 kb on - strand, within CA265_RS02305 at 575.190 kb on - strand, within CA265_RS02305 at 575.305 kb on + strand, within CA265_RS02305 at 575.306 kb on - strand, within CA265_RS02305 at 575.332 kb on - strand, within CA265_RS02305 at 575.362 kb on + strand, within CA265_RS02305 at 575.367 kb on + strand, within CA265_RS02305 at 575.368 kb on - strand, within CA265_RS02305 at 575.440 kb on - strand at 575.503 kb on + strand at 575.504 kb on - strand at 575.582 kb on - strand at 575.582 kb on - strand at 575.655 kb on + strand at 575.656 kb on - strand at 575.722 kb on - strand at 575.770 kb on + strand at 575.771 kb on - strand at 575.829 kb on + strand, within CA265_RS02310 at 575.829 kb on + strand, within CA265_RS02310 at 575.830 kb on - strand, within CA265_RS02310 at 575.830 kb on - strand, within CA265_RS02310 at 575.830 kb on - strand, within CA265_RS02310 at 575.860 kb on - strand, within CA265_RS02310 at 575.877 kb on + strand, within CA265_RS02310 at 575.905 kb on + strand, within CA265_RS02310 at 575.906 kb on - strand, within CA265_RS02310 at 575.907 kb on + strand, within CA265_RS02310 at 575.907 kb on + strand, within CA265_RS02310 at 575.907 kb on + strand, within CA265_RS02310 at 575.908 kb on - strand, within CA265_RS02310 at 575.908 kb on - strand, within CA265_RS02310 at 575.911 kb on + strand, within CA265_RS02310 at 576.015 kb on - strand, within CA265_RS02310 at 576.020 kb on - strand, within CA265_RS02310 at 576.144 kb on - strand at 576.144 kb on - strand at 576.158 kb on - strand at 576.244 kb on + strand at 576.285 kb on + strand at 576.285 kb on + strand at 576.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 574,051 + CA265_RS02300 0.11 +0.3 574,052 - CA265_RS02300 0.11 -1.5 574,052 - CA265_RS02300 0.11 +0.6 574,108 + CA265_RS02300 0.17 +0.2 574,126 - CA265_RS02300 0.20 -1.9 574,131 + CA265_RS02300 0.20 -1.4 574,157 + CA265_RS02300 0.23 +0.1 574,181 - CA265_RS02300 0.26 -0.1 574,181 - CA265_RS02300 0.26 -1.9 574,228 + CA265_RS02300 0.32 -0.4 574,240 - CA265_RS02300 0.33 -0.9 574,277 + CA265_RS02300 0.38 -1.4 574,278 - CA265_RS02300 0.38 -0.4 574,299 + CA265_RS02300 0.40 -0.0 574,306 + CA265_RS02300 0.41 -0.7 574,307 - CA265_RS02300 0.41 -0.9 574,605 - CA265_RS02300 0.77 -1.6 574,614 + CA265_RS02300 0.78 -0.4 574,619 + CA265_RS02300 0.78 -0.7 574,619 + CA265_RS02300 0.78 -0.1 574,641 + CA265_RS02300 0.81 -1.6 574,687 + CA265_RS02300 0.86 +0.7 574,714 + CA265_RS02300 0.90 +0.9 574,811 - +0.3 574,816 - -0.2 574,898 + +0.0 574,970 - CA265_RS02305 0.14 -1.1 575,052 - CA265_RS02305 0.30 -0.4 575,059 - CA265_RS02305 0.31 -1.9 575,081 + CA265_RS02305 0.35 -0.1 575,081 + CA265_RS02305 0.35 +0.5 575,089 - CA265_RS02305 0.36 +0.1 575,111 + CA265_RS02305 0.41 -0.9 575,146 - CA265_RS02305 0.47 -1.3 575,190 - CA265_RS02305 0.55 -0.9 575,190 - CA265_RS02305 0.55 +0.4 575,305 + CA265_RS02305 0.77 -0.1 575,306 - CA265_RS02305 0.77 -1.7 575,332 - CA265_RS02305 0.82 -0.6 575,362 + CA265_RS02305 0.87 +1.0 575,367 + CA265_RS02305 0.88 -0.1 575,368 - CA265_RS02305 0.88 -1.0 575,440 - +1.0 575,503 + -0.0 575,504 - -1.0 575,582 - -0.3 575,582 - +0.2 575,655 + +0.2 575,656 - +0.0 575,722 - +0.1 575,770 + +0.3 575,771 - -1.3 575,829 + CA265_RS02310 0.11 +0.6 575,829 + CA265_RS02310 0.11 -0.3 575,830 - CA265_RS02310 0.11 -0.1 575,830 - CA265_RS02310 0.11 +0.1 575,830 - CA265_RS02310 0.11 -0.2 575,860 - CA265_RS02310 0.19 -0.2 575,877 + CA265_RS02310 0.24 -0.1 575,905 + CA265_RS02310 0.32 -1.2 575,906 - CA265_RS02310 0.32 +0.4 575,907 + CA265_RS02310 0.32 +0.9 575,907 + CA265_RS02310 0.32 -0.0 575,907 + CA265_RS02310 0.32 -0.2 575,908 - CA265_RS02310 0.33 -1.2 575,908 - CA265_RS02310 0.33 +0.9 575,911 + CA265_RS02310 0.33 -0.4 576,015 - CA265_RS02310 0.62 +0.4 576,020 - CA265_RS02310 0.63 +0.9 576,144 - -1.5 576,144 - -0.4 576,158 - -1.4 576,244 + -1.0 576,285 + -0.5 576,285 + -0.7 576,420 - -0.1
Or see this region's nucleotide sequence