Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02235 and CA265_RS02240 are separated by 132 nucleotides CA265_RS02240 and CA265_RS02245 are separated by 12 nucleotides CA265_RS02245 and CA265_RS02250 are separated by 151 nucleotides
CA265_RS02235: CA265_RS02235 - hypothetical protein, at 565,055 to 566,206
_RS02235
CA265_RS02240: CA265_RS02240 - hypothetical protein, at 566,339 to 566,635
_RS02240
CA265_RS02245: CA265_RS02245 - hypothetical protein, at 566,648 to 567,238
_RS02245
CA265_RS02250: CA265_RS02250 - ribonuclease, at 567,390 to 568,313
_RS02250
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.770 kb on + strand, within CA265_RS02235 at 565.771 kb on - strand, within CA265_RS02235 at 565.826 kb on + strand, within CA265_RS02235 at 565.827 kb on - strand, within CA265_RS02235 at 565.838 kb on - strand, within CA265_RS02235 at 565.909 kb on + strand, within CA265_RS02235 at 565.910 kb on - strand, within CA265_RS02235 at 565.949 kb on + strand, within CA265_RS02235 at 565.985 kb on + strand, within CA265_RS02235 at 566.036 kb on - strand, within CA265_RS02235 at 566.059 kb on - strand, within CA265_RS02235 at 566.063 kb on - strand, within CA265_RS02235 at 566.063 kb on - strand, within CA265_RS02235 at 566.069 kb on - strand, within CA265_RS02235 at 566.073 kb on + strand, within CA265_RS02235 at 566.168 kb on + strand at 566.186 kb on + strand at 566.309 kb on - strand at 566.330 kb on + strand at 566.365 kb on - strand at 566.446 kb on - strand at 566.449 kb on + strand, within CA265_RS02240 at 566.449 kb on + strand, within CA265_RS02240 at 566.450 kb on - strand, within CA265_RS02240 at 566.494 kb on + strand, within CA265_RS02240 at 566.520 kb on + strand, within CA265_RS02240 at 566.520 kb on + strand, within CA265_RS02240 at 566.524 kb on + strand, within CA265_RS02240 at 566.525 kb on - strand, within CA265_RS02240 at 566.528 kb on - strand, within CA265_RS02240 at 566.691 kb on + strand at 566.734 kb on + strand, within CA265_RS02245 at 566.827 kb on - strand, within CA265_RS02245 at 566.862 kb on - strand, within CA265_RS02245 at 566.862 kb on - strand, within CA265_RS02245 at 566.915 kb on - strand, within CA265_RS02245 at 566.992 kb on - strand, within CA265_RS02245 at 567.021 kb on + strand, within CA265_RS02245 at 567.089 kb on - strand, within CA265_RS02245 at 567.115 kb on - strand, within CA265_RS02245 at 567.159 kb on + strand, within CA265_RS02245 at 567.193 kb on + strand at 567.199 kb on - strand at 567.205 kb on - strand at 567.220 kb on - strand at 567.242 kb on + strand at 567.243 kb on - strand at 567.243 kb on - strand at 567.262 kb on - strand at 567.332 kb on + strand at 567.392 kb on - strand at 567.452 kb on + strand at 567.452 kb on + strand at 567.455 kb on + strand at 567.488 kb on + strand, within CA265_RS02250 at 567.489 kb on - strand, within CA265_RS02250 at 567.543 kb on + strand, within CA265_RS02250 at 567.543 kb on + strand, within CA265_RS02250 at 567.544 kb on - strand, within CA265_RS02250 at 567.544 kb on - strand, within CA265_RS02250 at 567.573 kb on - strand, within CA265_RS02250 at 567.597 kb on + strand, within CA265_RS02250 at 567.612 kb on - strand, within CA265_RS02250 at 567.711 kb on - strand, within CA265_RS02250 at 567.711 kb on - strand, within CA265_RS02250 at 567.723 kb on + strand, within CA265_RS02250 at 567.811 kb on + strand, within CA265_RS02250 at 567.811 kb on + strand, within CA265_RS02250 at 567.811 kb on + strand, within CA265_RS02250 at 567.812 kb on - strand, within CA265_RS02250 at 567.896 kb on + strand, within CA265_RS02250 at 567.936 kb on - strand, within CA265_RS02250 at 568.010 kb on + strand, within CA265_RS02250 at 568.024 kb on + strand, within CA265_RS02250 at 568.025 kb on - strand, within CA265_RS02250 at 568.057 kb on - strand, within CA265_RS02250 at 568.074 kb on + strand, within CA265_RS02250 at 568.177 kb on - strand, within CA265_RS02250 at 568.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 565,770 + CA265_RS02235 0.62 -0.2 565,771 - CA265_RS02235 0.62 -0.3 565,826 + CA265_RS02235 0.67 -0.0 565,827 - CA265_RS02235 0.67 +0.2 565,838 - CA265_RS02235 0.68 +0.1 565,909 + CA265_RS02235 0.74 -0.1 565,910 - CA265_RS02235 0.74 -0.9 565,949 + CA265_RS02235 0.78 -0.3 565,985 + CA265_RS02235 0.81 +0.6 566,036 - CA265_RS02235 0.85 -1.0 566,059 - CA265_RS02235 0.87 +0.6 566,063 - CA265_RS02235 0.88 -0.3 566,063 - CA265_RS02235 0.88 -0.1 566,069 - CA265_RS02235 0.88 +0.0 566,073 + CA265_RS02235 0.88 +0.4 566,168 + -0.1 566,186 + -0.0 566,309 - +2.1 566,330 + -0.4 566,365 - -0.3 566,446 - +2.2 566,449 + CA265_RS02240 0.37 -1.2 566,449 + CA265_RS02240 0.37 +0.4 566,450 - CA265_RS02240 0.37 +1.4 566,494 + CA265_RS02240 0.52 +0.4 566,520 + CA265_RS02240 0.61 -0.3 566,520 + CA265_RS02240 0.61 -0.8 566,524 + CA265_RS02240 0.62 +0.1 566,525 - CA265_RS02240 0.63 +1.0 566,528 - CA265_RS02240 0.64 +0.3 566,691 + -0.2 566,734 + CA265_RS02245 0.15 -0.3 566,827 - CA265_RS02245 0.30 +0.0 566,862 - CA265_RS02245 0.36 +0.5 566,862 - CA265_RS02245 0.36 -0.3 566,915 - CA265_RS02245 0.45 +1.3 566,992 - CA265_RS02245 0.58 +1.0 567,021 + CA265_RS02245 0.63 +0.1 567,089 - CA265_RS02245 0.75 -0.4 567,115 - CA265_RS02245 0.79 +1.5 567,159 + CA265_RS02245 0.86 +0.8 567,193 + +0.1 567,199 - +0.5 567,205 - +1.4 567,220 - +1.1 567,242 + -0.7 567,243 - -0.0 567,243 - +0.4 567,262 - -0.2 567,332 + -1.4 567,392 - -0.9 567,452 + +0.1 567,452 + +0.2 567,455 + +0.3 567,488 + CA265_RS02250 0.11 +0.5 567,489 - CA265_RS02250 0.11 -0.5 567,543 + CA265_RS02250 0.17 +0.7 567,543 + CA265_RS02250 0.17 +0.6 567,544 - CA265_RS02250 0.17 -0.6 567,544 - CA265_RS02250 0.17 -0.7 567,573 - CA265_RS02250 0.20 -1.6 567,597 + CA265_RS02250 0.22 +0.1 567,612 - CA265_RS02250 0.24 -0.5 567,711 - CA265_RS02250 0.35 -0.2 567,711 - CA265_RS02250 0.35 -0.5 567,723 + CA265_RS02250 0.36 +0.2 567,811 + CA265_RS02250 0.46 +0.6 567,811 + CA265_RS02250 0.46 -0.1 567,811 + CA265_RS02250 0.46 +0.3 567,812 - CA265_RS02250 0.46 +0.3 567,896 + CA265_RS02250 0.55 +0.1 567,936 - CA265_RS02250 0.59 -1.8 568,010 + CA265_RS02250 0.67 -0.8 568,024 + CA265_RS02250 0.69 +0.3 568,025 - CA265_RS02250 0.69 -0.0 568,057 - CA265_RS02250 0.72 +0.7 568,074 + CA265_RS02250 0.74 -0.0 568,177 - CA265_RS02250 0.85 +0.5 568,231 - +0.2
Or see this region's nucleotide sequence