Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01580

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01575 and CA265_RS01580 are separated by 275 nucleotidesCA265_RS01580 and CA265_RS01585 are separated by 312 nucleotides CA265_RS01575: CA265_RS01575 - hypothetical protein, at 405,028 to 405,777 _RS01575 CA265_RS01580: CA265_RS01580 - alpha-glucosidase, at 406,053 to 407,939 _RS01580 CA265_RS01585: CA265_RS01585 - hypothetical protein, at 408,252 to 410,573 _RS01585 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 405.142 kb on - strand, within CA265_RS01575at 405.143 kb on + strand, within CA265_RS01575at 405.199 kb on + strand, within CA265_RS01575at 405.200 kb on - strand, within CA265_RS01575at 405.235 kb on + strand, within CA265_RS01575at 405.236 kb on - strand, within CA265_RS01575at 405.239 kb on - strand, within CA265_RS01575at 405.269 kb on - strand, within CA265_RS01575at 405.301 kb on - strand, within CA265_RS01575at 405.359 kb on - strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.360 kb on + strand, within CA265_RS01575at 405.361 kb on - strand, within CA265_RS01575at 405.362 kb on + strand, within CA265_RS01575at 405.363 kb on - strand, within CA265_RS01575at 405.366 kb on + strandat 405.366 kb on + strand, within CA265_RS01575at 405.408 kb on + strand, within CA265_RS01575at 405.409 kb on - strand, within CA265_RS01575at 405.422 kb on + strand, within CA265_RS01575at 405.475 kb on - strand, within CA265_RS01575at 405.588 kb on + strand, within CA265_RS01575at 405.604 kb on - strand, within CA265_RS01575at 405.639 kb on + strand, within CA265_RS01575at 405.650 kb on + strand, within CA265_RS01575at 405.651 kb on - strand, within CA265_RS01575at 405.651 kb on - strand, within CA265_RS01575at 405.748 kb on + strandat 405.816 kb on + strandat 405.909 kb on + strandat 405.959 kb on + strandat 406.012 kb on + strandat 406.012 kb on + strandat 406.068 kb on - strandat 406.072 kb on + strandat 406.090 kb on + strandat 406.199 kb on + strandat 406.199 kb on + strandat 406.346 kb on + strand, within CA265_RS01580at 406.350 kb on + strand, within CA265_RS01580at 406.435 kb on - strand, within CA265_RS01580at 406.435 kb on - strand, within CA265_RS01580at 406.435 kb on - strand, within CA265_RS01580at 406.436 kb on + strand, within CA265_RS01580at 406.436 kb on + strand, within CA265_RS01580at 406.436 kb on + strand, within CA265_RS01580at 406.459 kb on - strand, within CA265_RS01580at 406.503 kb on - strand, within CA265_RS01580at 406.563 kb on + strand, within CA265_RS01580at 406.611 kb on + strand, within CA265_RS01580at 406.671 kb on + strand, within CA265_RS01580at 406.671 kb on + strand, within CA265_RS01580at 406.780 kb on + strand, within CA265_RS01580at 406.780 kb on + strand, within CA265_RS01580at 406.808 kb on - strand, within CA265_RS01580at 406.821 kb on + strand, within CA265_RS01580at 406.822 kb on - strand, within CA265_RS01580at 406.822 kb on - strand, within CA265_RS01580at 406.838 kb on - strand, within CA265_RS01580at 406.864 kb on + strand, within CA265_RS01580at 406.864 kb on + strand, within CA265_RS01580at 406.864 kb on + strand, within CA265_RS01580at 406.889 kb on - strand, within CA265_RS01580at 406.963 kb on - strand, within CA265_RS01580at 406.998 kb on + strand, within CA265_RS01580at 406.999 kb on - strand, within CA265_RS01580at 407.004 kb on - strand, within CA265_RS01580at 407.027 kb on - strand, within CA265_RS01580at 407.065 kb on + strand, within CA265_RS01580at 407.076 kb on - strand, within CA265_RS01580at 407.116 kb on - strand, within CA265_RS01580at 407.150 kb on + strand, within CA265_RS01580at 407.168 kb on + strand, within CA265_RS01580at 407.378 kb on + strand, within CA265_RS01580at 407.461 kb on + strand, within CA265_RS01580at 407.510 kb on - strand, within CA265_RS01580at 407.511 kb on + strand, within CA265_RS01580at 407.513 kb on + strand, within CA265_RS01580at 407.532 kb on + strand, within CA265_RS01580at 407.538 kb on + strand, within CA265_RS01580at 407.599 kb on + strand, within CA265_RS01580at 407.599 kb on + strand, within CA265_RS01580at 407.677 kb on + strand, within CA265_RS01580at 407.694 kb on - strand, within CA265_RS01580at 407.694 kb on - strand, within CA265_RS01580at 407.696 kb on - strand, within CA265_RS01580at 407.730 kb on - strand, within CA265_RS01580at 407.827 kb on + strandat 407.867 kb on - strandat 407.937 kb on + strandat 407.952 kb on - strandat 407.992 kb on + strandat 407.992 kb on + strandat 407.993 kb on - strandat 408.004 kb on + strandat 408.005 kb on - strandat 408.010 kb on + strandat 408.048 kb on - strandat 408.126 kb on - strandat 408.135 kb on + strandat 408.136 kb on - strandat 408.188 kb on - strandat 408.190 kb on + strandat 408.194 kb on - strandat 408.195 kb on + strandat 408.244 kb on + strandat 408.244 kb on + strandat 408.271 kb on - strandat 408.275 kb on - strandat 408.275 kb on - strandat 408.320 kb on + strandat 408.320 kb on + strandat 408.321 kb on - strandat 408.321 kb on - strandat 408.482 kb on + strandat 408.483 kb on - strandat 408.498 kb on - strand, within CA265_RS01585at 408.518 kb on - strand, within CA265_RS01585at 408.559 kb on + strand, within CA265_RS01585at 408.560 kb on - strand, within CA265_RS01585at 408.584 kb on + strand, within CA265_RS01585at 408.718 kb on + strand, within CA265_RS01585at 408.719 kb on - strand, within CA265_RS01585at 408.725 kb on + strand, within CA265_RS01585at 408.846 kb on - strand, within CA265_RS01585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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405,142 - CA265_RS01575 0.15 +0.9
405,143 + CA265_RS01575 0.15 +0.6
405,199 + CA265_RS01575 0.23 +0.4
405,200 - CA265_RS01575 0.23 +0.0
405,235 + CA265_RS01575 0.28 +0.9
405,236 - CA265_RS01575 0.28 -0.3
405,239 - CA265_RS01575 0.28 +0.0
405,269 - CA265_RS01575 0.32 +0.7
405,301 - CA265_RS01575 0.36 -0.7
405,359 - CA265_RS01575 0.44 -1.3
405,360 + CA265_RS01575 0.44 -0.3
405,360 + CA265_RS01575 0.44 +0.1
405,360 + CA265_RS01575 0.44 +0.6
405,361 - CA265_RS01575 0.44 +0.7
405,362 + CA265_RS01575 0.45 -0.4
405,363 - CA265_RS01575 0.45 -2.5
405,366 + +1.2
405,366 + CA265_RS01575 0.45 +0.3
405,408 + CA265_RS01575 0.51 +1.8
405,409 - CA265_RS01575 0.51 +0.9
405,422 + CA265_RS01575 0.53 +0.2
405,475 - CA265_RS01575 0.60 +0.9
405,588 + CA265_RS01575 0.75 +0.2
405,604 - CA265_RS01575 0.77 -0.0
405,639 + CA265_RS01575 0.81 +0.4
405,650 + CA265_RS01575 0.83 +0.0
405,651 - CA265_RS01575 0.83 +0.3
405,651 - CA265_RS01575 0.83 -0.4
405,748 + +0.3
405,816 + +0.5
405,909 + -0.2
405,959 + -0.4
406,012 + +0.5
406,012 + -0.1
406,068 - +0.5
406,072 + -0.4
406,090 + +0.4
406,199 + +0.0
406,199 + -1.6
406,346 + CA265_RS01580 0.16 -0.5
406,350 + CA265_RS01580 0.16 -0.6
406,435 - CA265_RS01580 0.20 +0.6
406,435 - CA265_RS01580 0.20 -0.8
406,435 - CA265_RS01580 0.20 -0.2
406,436 + CA265_RS01580 0.20 +0.6
406,436 + CA265_RS01580 0.20 -1.4
406,436 + CA265_RS01580 0.20 -0.2
406,459 - CA265_RS01580 0.22 -0.5
406,503 - CA265_RS01580 0.24 -1.1
406,563 + CA265_RS01580 0.27 -0.2
406,611 + CA265_RS01580 0.30 +0.7
406,671 + CA265_RS01580 0.33 -0.8
406,671 + CA265_RS01580 0.33 -0.4
406,780 + CA265_RS01580 0.39 -0.5
406,780 + CA265_RS01580 0.39 -2.3
406,808 - CA265_RS01580 0.40 -0.5
406,821 + CA265_RS01580 0.41 +0.3
406,822 - CA265_RS01580 0.41 +0.4
406,822 - CA265_RS01580 0.41 +0.3
406,838 - CA265_RS01580 0.42 -0.9
406,864 + CA265_RS01580 0.43 -0.0
406,864 + CA265_RS01580 0.43 +0.9
406,864 + CA265_RS01580 0.43 +0.8
406,889 - CA265_RS01580 0.44 +0.0
406,963 - CA265_RS01580 0.48 +0.2
406,998 + CA265_RS01580 0.50 -0.7
406,999 - CA265_RS01580 0.50 +0.1
407,004 - CA265_RS01580 0.50 +0.3
407,027 - CA265_RS01580 0.52 -0.9
407,065 + CA265_RS01580 0.54 +0.3
407,076 - CA265_RS01580 0.54 -0.6
407,116 - CA265_RS01580 0.56 +0.2
407,150 + CA265_RS01580 0.58 -0.5
407,168 + CA265_RS01580 0.59 -0.5
407,378 + CA265_RS01580 0.70 -0.2
407,461 + CA265_RS01580 0.75 +0.3
407,510 - CA265_RS01580 0.77 -0.2
407,511 + CA265_RS01580 0.77 +0.2
407,513 + CA265_RS01580 0.77 -0.0
407,532 + CA265_RS01580 0.78 -0.3
407,538 + CA265_RS01580 0.79 +0.2
407,599 + CA265_RS01580 0.82 +0.0
407,599 + CA265_RS01580 0.82 -0.3
407,677 + CA265_RS01580 0.86 +0.7
407,694 - CA265_RS01580 0.87 +0.3
407,694 - CA265_RS01580 0.87 -0.9
407,696 - CA265_RS01580 0.87 +1.8
407,730 - CA265_RS01580 0.89 +0.3
407,827 + +0.1
407,867 - -0.9
407,937 + +0.5
407,952 - +0.6
407,992 + +0.4
407,992 + +0.7
407,993 - +1.1
408,004 + -0.0
408,005 - -0.0
408,010 + +0.4
408,048 - -0.6
408,126 - -0.2
408,135 + +0.4
408,136 - -0.1
408,188 - +0.1
408,190 + +0.4
408,194 - +0.1
408,195 + -1.6
408,244 + +0.5
408,244 + -0.1
408,271 - +0.3
408,275 - +1.4
408,275 - -1.1
408,320 + +1.4
408,320 + -0.1
408,321 - -1.5
408,321 - -1.2
408,482 + -0.0
408,483 - -1.6
408,498 - CA265_RS01585 0.11 -0.3
408,518 - CA265_RS01585 0.11 -0.8
408,559 + CA265_RS01585 0.13 +0.1
408,560 - CA265_RS01585 0.13 -0.1
408,584 + CA265_RS01585 0.14 -0.8
408,718 + CA265_RS01585 0.20 -0.7
408,719 - CA265_RS01585 0.20 -1.5
408,725 + CA265_RS01585 0.20 -0.9
408,846 - CA265_RS01585 0.26 -2.8

Or see this region's nucleotide sequence