Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01095 and CA265_RS01100 are separated by 945 nucleotides CA265_RS01100 and CA265_RS01105 are separated by 29 nucleotides
CA265_RS01095: CA265_RS01095 - transcriptional regulator, at 277,055 to 277,705
_RS01095
CA265_RS01100: CA265_RS01100 - transcriptional regulator, at 278,651 to 279,040
_RS01100
CA265_RS01105: CA265_RS01105 - hypothetical protein, at 279,070 to 280,968
_RS01105
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.673 kb on + strand at 277.718 kb on - strand at 277.771 kb on - strand at 277.828 kb on - strand at 277.836 kb on - strand at 277.836 kb on - strand at 277.861 kb on + strand at 277.862 kb on - strand at 277.940 kb on + strand at 277.979 kb on + strand at 278.002 kb on + strand at 278.002 kb on + strand at 278.003 kb on - strand at 278.023 kb on + strand at 278.048 kb on - strand at 278.136 kb on - strand at 278.162 kb on - strand at 278.177 kb on + strand at 278.210 kb on + strand at 278.211 kb on - strand at 278.211 kb on - strand at 278.211 kb on - strand at 278.222 kb on + strand at 278.234 kb on + strand at 278.234 kb on + strand at 278.294 kb on - strand at 278.326 kb on - strand at 278.376 kb on + strand at 278.391 kb on + strand at 278.391 kb on + strand at 278.392 kb on - strand at 278.468 kb on - strand at 278.497 kb on + strand at 278.640 kb on - strand at 278.660 kb on - strand at 278.740 kb on + strand, within CA265_RS01100 at 278.838 kb on + strand, within CA265_RS01100 at 278.838 kb on + strand, within CA265_RS01100 at 278.838 kb on + strand, within CA265_RS01100 at 278.839 kb on - strand, within CA265_RS01100 at 278.839 kb on - strand, within CA265_RS01100 at 278.871 kb on - strand, within CA265_RS01100 at 278.872 kb on + strand, within CA265_RS01100 at 278.873 kb on - strand, within CA265_RS01100 at 278.913 kb on + strand, within CA265_RS01100 at 278.926 kb on - strand, within CA265_RS01100 at 278.930 kb on - strand, within CA265_RS01100 at 278.936 kb on + strand, within CA265_RS01100 at 278.958 kb on + strand, within CA265_RS01100 at 279.012 kb on + strand at 279.013 kb on - strand at 279.039 kb on - strand at 279.192 kb on + strand at 279.260 kb on + strand, within CA265_RS01105 at 279.266 kb on + strand, within CA265_RS01105 at 279.267 kb on - strand, within CA265_RS01105 at 279.267 kb on - strand, within CA265_RS01105 at 279.422 kb on - strand, within CA265_RS01105 at 279.438 kb on - strand, within CA265_RS01105 at 279.485 kb on + strand, within CA265_RS01105 at 279.500 kb on + strand, within CA265_RS01105 at 279.500 kb on + strand, within CA265_RS01105 at 279.501 kb on - strand, within CA265_RS01105 at 279.501 kb on - strand, within CA265_RS01105 at 279.501 kb on - strand, within CA265_RS01105 at 279.503 kb on - strand, within CA265_RS01105 at 279.519 kb on + strand, within CA265_RS01105 at 279.520 kb on - strand, within CA265_RS01105 at 279.520 kb on - strand, within CA265_RS01105 at 279.585 kb on - strand, within CA265_RS01105 at 279.671 kb on + strand, within CA265_RS01105 at 279.752 kb on - strand, within CA265_RS01105 at 279.759 kb on - strand, within CA265_RS01105 at 279.767 kb on + strand, within CA265_RS01105 at 279.879 kb on - strand, within CA265_RS01105 at 279.946 kb on + strand, within CA265_RS01105 at 279.947 kb on - strand, within CA265_RS01105 at 279.947 kb on - strand, within CA265_RS01105
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 277,673 + +0.9 277,718 - -0.1 277,771 - -0.3 277,828 - -0.1 277,836 - -0.8 277,836 - +0.4 277,861 + -0.2 277,862 - +0.4 277,940 + -0.5 277,979 + +0.9 278,002 + +0.7 278,002 + +0.1 278,003 - +0.8 278,023 + -0.7 278,048 - +0.3 278,136 - -0.3 278,162 - +1.8 278,177 + -0.1 278,210 + +0.3 278,211 - +0.2 278,211 - -0.5 278,211 - -0.1 278,222 + +0.6 278,234 + -1.3 278,234 + +0.2 278,294 - -0.9 278,326 - +0.5 278,376 + +0.1 278,391 + -0.2 278,391 + -0.1 278,392 - -0.3 278,468 - -0.2 278,497 + +0.5 278,640 - -1.1 278,660 - +0.5 278,740 + CA265_RS01100 0.23 +1.3 278,838 + CA265_RS01100 0.48 +0.2 278,838 + CA265_RS01100 0.48 +1.4 278,838 + CA265_RS01100 0.48 +0.9 278,839 - CA265_RS01100 0.48 -0.4 278,839 - CA265_RS01100 0.48 +1.5 278,871 - CA265_RS01100 0.56 +0.8 278,872 + CA265_RS01100 0.57 +0.4 278,873 - CA265_RS01100 0.57 +0.9 278,913 + CA265_RS01100 0.67 -0.6 278,926 - CA265_RS01100 0.71 +1.0 278,930 - CA265_RS01100 0.72 +1.0 278,936 + CA265_RS01100 0.73 +0.6 278,958 + CA265_RS01100 0.79 +0.6 279,012 + +1.5 279,013 - +0.3 279,039 - +0.9 279,192 + -1.0 279,260 + CA265_RS01105 0.10 -0.1 279,266 + CA265_RS01105 0.10 -0.7 279,267 - CA265_RS01105 0.10 -0.4 279,267 - CA265_RS01105 0.10 +0.9 279,422 - CA265_RS01105 0.19 -0.7 279,438 - CA265_RS01105 0.19 -1.6 279,485 + CA265_RS01105 0.22 -0.7 279,500 + CA265_RS01105 0.23 -0.3 279,500 + CA265_RS01105 0.23 +0.5 279,501 - CA265_RS01105 0.23 -1.5 279,501 - CA265_RS01105 0.23 -0.1 279,501 - CA265_RS01105 0.23 -0.3 279,503 - CA265_RS01105 0.23 +0.8 279,519 + CA265_RS01105 0.24 +0.5 279,520 - CA265_RS01105 0.24 +0.3 279,520 - CA265_RS01105 0.24 +0.8 279,585 - CA265_RS01105 0.27 -0.4 279,671 + CA265_RS01105 0.32 +0.1 279,752 - CA265_RS01105 0.36 +0.2 279,759 - CA265_RS01105 0.36 +0.7 279,767 + CA265_RS01105 0.37 -0.2 279,879 - CA265_RS01105 0.43 +0.2 279,946 + CA265_RS01105 0.46 +0.6 279,947 - CA265_RS01105 0.46 -2.4 279,947 - CA265_RS01105 0.46 +0.5
Or see this region's nucleotide sequence