Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01030 and CA265_RS01035 are separated by 40 nucleotides CA265_RS01035 and CA265_RS01040 are separated by 88 nucleotides
CA265_RS01030: CA265_RS01030 - ABC transporter substrate-binding protein, at 261,516 to 263,150
_RS01030
CA265_RS01035: CA265_RS01035 - hypothetical protein, at 263,191 to 263,649
_RS01035
CA265_RS01040: CA265_RS01040 - sigma-54-dependent Fis family transcriptional regulator, at 263,738 to 265,075
_RS01040
Position (kb) 263
264 Strain fitness (log2 ratio) -1
0
1 at 262.239 kb on - strand, within CA265_RS01030 at 262.249 kb on - strand, within CA265_RS01030 at 262.259 kb on - strand, within CA265_RS01030 at 262.367 kb on + strand, within CA265_RS01030 at 262.367 kb on + strand, within CA265_RS01030 at 262.368 kb on - strand, within CA265_RS01030 at 262.588 kb on + strand, within CA265_RS01030 at 262.589 kb on - strand, within CA265_RS01030 at 262.597 kb on - strand, within CA265_RS01030 at 262.625 kb on - strand, within CA265_RS01030 at 262.639 kb on - strand, within CA265_RS01030 at 262.703 kb on + strand, within CA265_RS01030 at 262.758 kb on + strand, within CA265_RS01030 at 262.790 kb on - strand, within CA265_RS01030 at 262.791 kb on + strand, within CA265_RS01030 at 262.791 kb on + strand, within CA265_RS01030 at 262.856 kb on - strand, within CA265_RS01030 at 262.883 kb on - strand, within CA265_RS01030 at 262.923 kb on - strand, within CA265_RS01030 at 262.956 kb on + strand, within CA265_RS01030 at 263.048 kb on + strand at 263.049 kb on - strand at 263.091 kb on - strand at 263.104 kb on - strand at 263.104 kb on - strand at 263.131 kb on + strand at 263.286 kb on + strand, within CA265_RS01035 at 263.319 kb on - strand, within CA265_RS01035 at 263.322 kb on + strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.410 kb on - strand, within CA265_RS01035 at 263.412 kb on + strand, within CA265_RS01035 at 263.574 kb on + strand, within CA265_RS01035 at 263.647 kb on + strand at 263.757 kb on + strand at 263.775 kb on + strand at 263.882 kb on - strand, within CA265_RS01040 at 263.882 kb on - strand, within CA265_RS01040 at 263.940 kb on - strand, within CA265_RS01040 at 264.032 kb on + strand, within CA265_RS01040 at 264.059 kb on - strand, within CA265_RS01040 at 264.069 kb on - strand, within CA265_RS01040 at 264.097 kb on - strand, within CA265_RS01040 at 264.175 kb on - strand, within CA265_RS01040 at 264.216 kb on - strand, within CA265_RS01040 at 264.284 kb on - strand, within CA265_RS01040 at 264.404 kb on - strand, within CA265_RS01040 at 264.520 kb on - strand, within CA265_RS01040 at 264.526 kb on + strand, within CA265_RS01040 at 264.526 kb on + strand, within CA265_RS01040 at 264.581 kb on - strand, within CA265_RS01040 at 264.647 kb on - strand, within CA265_RS01040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 262,239 - CA265_RS01030 0.44 -0.6 262,249 - CA265_RS01030 0.45 -0.8 262,259 - CA265_RS01030 0.45 -1.6 262,367 + CA265_RS01030 0.52 +1.6 262,367 + CA265_RS01030 0.52 -0.1 262,368 - CA265_RS01030 0.52 +0.0 262,588 + CA265_RS01030 0.66 -1.4 262,589 - CA265_RS01030 0.66 +0.6 262,597 - CA265_RS01030 0.66 -0.6 262,625 - CA265_RS01030 0.68 +0.3 262,639 - CA265_RS01030 0.69 -0.6 262,703 + CA265_RS01030 0.73 -0.2 262,758 + CA265_RS01030 0.76 -0.4 262,790 - CA265_RS01030 0.78 -0.3 262,791 + CA265_RS01030 0.78 -0.9 262,791 + CA265_RS01030 0.78 -1.0 262,856 - CA265_RS01030 0.82 -0.7 262,883 - CA265_RS01030 0.84 +1.6 262,923 - CA265_RS01030 0.86 -0.9 262,956 + CA265_RS01030 0.88 -1.4 263,048 + +0.7 263,049 - -0.6 263,091 - -0.6 263,104 - -0.1 263,104 - -1.1 263,131 + -0.9 263,286 + CA265_RS01035 0.21 +0.2 263,319 - CA265_RS01035 0.28 +0.0 263,322 + CA265_RS01035 0.29 +0.3 263,406 - CA265_RS01035 0.47 +0.3 263,406 - CA265_RS01035 0.47 +1.3 263,406 - CA265_RS01035 0.47 +0.3 263,410 - CA265_RS01035 0.48 +0.5 263,412 + CA265_RS01035 0.48 +0.8 263,574 + CA265_RS01035 0.83 +0.4 263,647 + -0.5 263,757 + +1.1 263,775 + -0.4 263,882 - CA265_RS01040 0.11 +0.2 263,882 - CA265_RS01040 0.11 -0.3 263,940 - CA265_RS01040 0.15 +0.5 264,032 + CA265_RS01040 0.22 +0.2 264,059 - CA265_RS01040 0.24 +0.7 264,069 - CA265_RS01040 0.25 +0.9 264,097 - CA265_RS01040 0.27 -0.2 264,175 - CA265_RS01040 0.33 +0.6 264,216 - CA265_RS01040 0.36 -0.4 264,284 - CA265_RS01040 0.41 +1.1 264,404 - CA265_RS01040 0.50 +0.0 264,520 - CA265_RS01040 0.58 +0.7 264,526 + CA265_RS01040 0.59 +0.2 264,526 + CA265_RS01040 0.59 -0.1 264,581 - CA265_RS01040 0.63 +0.9 264,647 - CA265_RS01040 0.68 -0.9
Or see this region's nucleotide sequence