Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13060

Experiment: CDM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13055 and BBR_RS13060 are separated by 144 nucleotidesBBR_RS13060 and BBR_RS13065 are separated by 15 nucleotides BBR_RS13055: BBR_RS13055 - ABC transporter substrate-binding protein, at 701,991 to 702,932 _RS13055 BBR_RS13060: BBR_RS13060 - amino acid ABC transporter permease, at 703,077 to 704,060 _RS13060 BBR_RS13065: BBR_RS13065 - amino acid ABC transporter ATP-binding protein, at 704,076 to 704,906 _RS13065 Position (kb) 703 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 702.081 kb on + strandat 702.109 kb on + strand, within BBR_RS13055at 702.117 kb on - strand, within BBR_RS13055at 702.153 kb on - strand, within BBR_RS13055at 702.169 kb on + strand, within BBR_RS13055at 702.228 kb on - strand, within BBR_RS13055at 702.271 kb on - strand, within BBR_RS13055at 702.291 kb on + strand, within BBR_RS13055at 702.299 kb on - strand, within BBR_RS13055at 702.308 kb on + strand, within BBR_RS13055at 702.308 kb on + strand, within BBR_RS13055at 702.308 kb on + strand, within BBR_RS13055at 702.358 kb on - strand, within BBR_RS13055at 702.421 kb on + strand, within BBR_RS13055at 702.423 kb on + strand, within BBR_RS13055at 702.429 kb on - strand, within BBR_RS13055at 702.431 kb on - strand, within BBR_RS13055at 702.452 kb on - strand, within BBR_RS13055at 702.457 kb on - strand, within BBR_RS13055at 702.457 kb on - strand, within BBR_RS13055at 702.467 kb on + strand, within BBR_RS13055at 702.479 kb on + strand, within BBR_RS13055at 702.487 kb on - strand, within BBR_RS13055at 702.508 kb on + strand, within BBR_RS13055at 702.508 kb on + strand, within BBR_RS13055at 702.517 kb on + strand, within BBR_RS13055at 702.540 kb on - strand, within BBR_RS13055at 702.560 kb on + strand, within BBR_RS13055at 702.565 kb on + strand, within BBR_RS13055at 702.569 kb on + strand, within BBR_RS13055at 702.577 kb on + strand, within BBR_RS13055at 702.585 kb on - strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.587 kb on + strand, within BBR_RS13055at 702.595 kb on - strand, within BBR_RS13055at 702.595 kb on - strand, within BBR_RS13055at 702.595 kb on - strand, within BBR_RS13055at 702.595 kb on - strand, within BBR_RS13055at 702.595 kb on - strand, within BBR_RS13055at 702.608 kb on + strand, within BBR_RS13055at 702.613 kb on + strand, within BBR_RS13055at 702.618 kb on + strand, within BBR_RS13055at 702.621 kb on - strand, within BBR_RS13055at 702.630 kb on + strand, within BBR_RS13055at 702.763 kb on - strand, within BBR_RS13055at 702.805 kb on + strand, within BBR_RS13055at 702.818 kb on + strand, within BBR_RS13055at 702.867 kb on + strandat 702.872 kb on + strandat 702.880 kb on - strandat 702.880 kb on - strandat 702.894 kb on + strandat 702.902 kb on - strandat 702.902 kb on - strandat 702.902 kb on - strandat 702.907 kb on - strandat 702.919 kb on - strandat 702.931 kb on + strandat 702.940 kb on - strandat 702.943 kb on - strandat 702.947 kb on + strandat 702.952 kb on - strandat 702.973 kb on + strandat 702.981 kb on + strandat 702.981 kb on + strandat 702.981 kb on - strandat 702.998 kb on - strandat 703.050 kb on + strandat 703.058 kb on - strandat 703.112 kb on - strandat 703.112 kb on - strandat 703.114 kb on + strandat 703.122 kb on - strandat 703.148 kb on - strandat 703.232 kb on - strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.291 kb on + strand, within BBR_RS13060at 703.303 kb on - strand, within BBR_RS13060at 703.323 kb on + strand, within BBR_RS13060at 703.323 kb on + strand, within BBR_RS13060at 703.325 kb on - strand, within BBR_RS13060at 703.349 kb on - strand, within BBR_RS13060at 703.374 kb on + strand, within BBR_RS13060at 703.392 kb on - strand, within BBR_RS13060at 703.422 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.491 kb on + strand, within BBR_RS13060at 703.499 kb on - strand, within BBR_RS13060at 703.523 kb on + strand, within BBR_RS13060at 703.564 kb on + strand, within BBR_RS13060at 703.569 kb on + strand, within BBR_RS13060at 703.674 kb on + strand, within BBR_RS13060at 703.674 kb on + strand, within BBR_RS13060at 703.684 kb on + strand, within BBR_RS13060at 703.697 kb on + strand, within BBR_RS13060at 703.697 kb on + strand, within BBR_RS13060at 703.703 kb on + strand, within BBR_RS13060at 703.703 kb on + strand, within BBR_RS13060at 703.705 kb on - strand, within BBR_RS13060at 703.752 kb on + strand, within BBR_RS13060at 703.756 kb on + strand, within BBR_RS13060at 703.759 kb on - strand, within BBR_RS13060at 703.760 kb on - strand, within BBR_RS13060at 703.774 kb on + strand, within BBR_RS13060at 703.774 kb on + strand, within BBR_RS13060at 703.782 kb on - strand, within BBR_RS13060at 703.789 kb on + strand, within BBR_RS13060at 703.791 kb on - strand, within BBR_RS13060at 703.872 kb on - strand, within BBR_RS13060at 703.875 kb on + strand, within BBR_RS13060at 703.885 kb on + strand, within BBR_RS13060at 703.891 kb on + strand, within BBR_RS13060at 703.893 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.899 kb on - strand, within BBR_RS13060at 703.913 kb on + strand, within BBR_RS13060at 703.934 kb on + strand, within BBR_RS13060at 703.964 kb on + strandat 703.985 kb on + strandat 703.999 kb on - strandat 704.011 kb on - strandat 704.023 kb on + strandat 704.093 kb on + strandat 704.098 kb on + strandat 704.098 kb on + strandat 704.098 kb on + strandat 704.109 kb on + strandat 704.122 kb on + strandat 704.122 kb on - strandat 704.157 kb on + strandat 704.165 kb on + strand, within BBR_RS13065at 704.180 kb on - strand, within BBR_RS13065at 704.192 kb on + strand, within BBR_RS13065at 704.192 kb on + strand, within BBR_RS13065at 704.200 kb on - strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.219 kb on + strand, within BBR_RS13065at 704.232 kb on - strand, within BBR_RS13065at 704.264 kb on + strand, within BBR_RS13065at 704.271 kb on + strand, within BBR_RS13065at 704.271 kb on + strand, within BBR_RS13065at 704.373 kb on + strand, within BBR_RS13065at 704.381 kb on - strand, within BBR_RS13065at 704.383 kb on + strand, within BBR_RS13065at 704.424 kb on + strand, within BBR_RS13065at 704.430 kb on + strand, within BBR_RS13065at 704.436 kb on - strand, within BBR_RS13065at 704.504 kb on + strand, within BBR_RS13065at 704.512 kb on - strand, within BBR_RS13065at 704.518 kb on - strand, within BBR_RS13065at 704.534 kb on + strand, within BBR_RS13065at 704.562 kb on - strand, within BBR_RS13065at 704.567 kb on - strand, within BBR_RS13065at 704.576 kb on + strand, within BBR_RS13065at 704.605 kb on + strand, within BBR_RS13065at 704.709 kb on + strand, within BBR_RS13065at 704.711 kb on + strand, within BBR_RS13065at 704.716 kb on + strand, within BBR_RS13065at 704.719 kb on - strand, within BBR_RS13065at 704.719 kb on - strand, within BBR_RS13065at 704.724 kb on - strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.741 kb on + strand, within BBR_RS13065at 704.748 kb on + strand, within BBR_RS13065at 704.750 kb on - strand, within BBR_RS13065at 704.754 kb on + strand, within BBR_RS13065at 704.784 kb on - strand, within BBR_RS13065at 704.898 kb on + strandat 704.958 kb on + strandat 704.958 kb on + strandat 704.969 kb on + strandat 705.022 kb on + strandat 705.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1
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702,081 + -0.1
702,109 + BBR_RS13055 0.13 +0.4
702,117 - BBR_RS13055 0.13 -0.6
702,153 - BBR_RS13055 0.17 +1.2
702,169 + BBR_RS13055 0.19 -0.1
702,228 - BBR_RS13055 0.25 -1.5
702,271 - BBR_RS13055 0.30 -0.9
702,291 + BBR_RS13055 0.32 +1.2
702,299 - BBR_RS13055 0.33 +0.2
702,308 + BBR_RS13055 0.34 -0.1
702,308 + BBR_RS13055 0.34 +0.7
702,308 + BBR_RS13055 0.34 -0.3
702,358 - BBR_RS13055 0.39 +0.1
702,421 + BBR_RS13055 0.46 +0.2
702,423 + BBR_RS13055 0.46 +1.3
702,429 - BBR_RS13055 0.46 -1.7
702,431 - BBR_RS13055 0.47 +0.8
702,452 - BBR_RS13055 0.49 -2.5
702,457 - BBR_RS13055 0.49 -1.0
702,457 - BBR_RS13055 0.49 -0.4
702,467 + BBR_RS13055 0.51 +0.3
702,479 + BBR_RS13055 0.52 +1.1
702,487 - BBR_RS13055 0.53 -0.3
702,508 + BBR_RS13055 0.55 +0.0
702,508 + BBR_RS13055 0.55 +0.5
702,517 + BBR_RS13055 0.56 +0.5
702,540 - BBR_RS13055 0.58 -1.5
702,560 + BBR_RS13055 0.60 +0.5
702,565 + BBR_RS13055 0.61 +1.2
702,569 + BBR_RS13055 0.61 +1.0
702,577 + BBR_RS13055 0.62 +0.3
702,585 - BBR_RS13055 0.63 -1.1
702,587 + BBR_RS13055 0.63 +0.8
702,587 + BBR_RS13055 0.63 +1.6
702,587 + BBR_RS13055 0.63 +1.2
702,587 + BBR_RS13055 0.63 +1.2
702,587 + BBR_RS13055 0.63 +0.0
702,587 + BBR_RS13055 0.63 +1.7
702,595 - BBR_RS13055 0.64 +0.6
702,595 - BBR_RS13055 0.64 +0.1
702,595 - BBR_RS13055 0.64 -0.9
702,595 - BBR_RS13055 0.64 -1.1
702,595 - BBR_RS13055 0.64 -0.3
702,608 + BBR_RS13055 0.65 +1.9
702,613 + BBR_RS13055 0.66 -0.8
702,618 + BBR_RS13055 0.67 +0.9
702,621 - BBR_RS13055 0.67 -2.1
702,630 + BBR_RS13055 0.68 +0.9
702,763 - BBR_RS13055 0.82 -1.1
702,805 + BBR_RS13055 0.86 +2.2
702,818 + BBR_RS13055 0.88 +0.5
702,867 + +0.5
702,872 + +1.4
702,880 - +0.0
702,880 - -3.6
702,894 + -0.1
702,902 - -2.0
702,902 - +0.9
702,902 - -0.4
702,907 - -0.8
702,919 - -1.0
702,931 + -1.0
702,940 - +0.2
702,943 - -1.1
702,947 + +1.3
702,952 - +0.6
702,973 + +0.4
702,981 + +0.1
702,981 + +0.5
702,981 - -1.8
702,998 - -0.7
703,050 + +2.2
703,058 - +1.1
703,112 - +1.4
703,112 - +1.3
703,114 + +0.7
703,122 - +0.7
703,148 - +0.8
703,232 - BBR_RS13060 0.16 +1.4
703,291 + BBR_RS13060 0.22 +0.5
703,291 + BBR_RS13060 0.22 +0.4
703,291 + BBR_RS13060 0.22 -1.1
703,303 - BBR_RS13060 0.23 -0.6
703,323 + BBR_RS13060 0.25 -0.7
703,323 + BBR_RS13060 0.25 +1.6
703,325 - BBR_RS13060 0.25 +0.3
703,349 - BBR_RS13060 0.28 +0.6
703,374 + BBR_RS13060 0.30 -0.0
703,392 - BBR_RS13060 0.32 -1.6
703,422 + BBR_RS13060 0.35 +0.6
703,491 + BBR_RS13060 0.42 +1.5
703,491 + BBR_RS13060 0.42 +0.5
703,491 + BBR_RS13060 0.42 +1.1
703,491 + BBR_RS13060 0.42 +0.3
703,499 - BBR_RS13060 0.43 -1.3
703,523 + BBR_RS13060 0.45 +0.4
703,564 + BBR_RS13060 0.49 +0.6
703,569 + BBR_RS13060 0.50 +0.5
703,674 + BBR_RS13060 0.61 +0.5
703,674 + BBR_RS13060 0.61 +0.3
703,684 + BBR_RS13060 0.62 +2.1
703,697 + BBR_RS13060 0.63 +0.5
703,697 + BBR_RS13060 0.63 +0.6
703,703 + BBR_RS13060 0.64 +0.1
703,703 + BBR_RS13060 0.64 -0.1
703,705 - BBR_RS13060 0.64 +1.1
703,752 + BBR_RS13060 0.69 +0.8
703,756 + BBR_RS13060 0.69 +0.8
703,759 - BBR_RS13060 0.69 -1.4
703,760 - BBR_RS13060 0.69 -1.0
703,774 + BBR_RS13060 0.71 +0.4
703,774 + BBR_RS13060 0.71 -0.8
703,782 - BBR_RS13060 0.72 -1.3
703,789 + BBR_RS13060 0.72 +2.0
703,791 - BBR_RS13060 0.73 +0.4
703,872 - BBR_RS13060 0.81 -1.9
703,875 + BBR_RS13060 0.81 +0.3
703,885 + BBR_RS13060 0.82 +0.7
703,891 + BBR_RS13060 0.83 +0.2
703,893 - BBR_RS13060 0.83 -0.4
703,899 - BBR_RS13060 0.84 -1.3
703,899 - BBR_RS13060 0.84 -3.3
703,899 - BBR_RS13060 0.84 +2.4
703,913 + BBR_RS13060 0.85 +0.3
703,934 + BBR_RS13060 0.87 +1.1
703,964 + -0.8
703,985 + +0.0
703,999 - -0.9
704,011 - -0.4
704,023 + -0.1
704,093 + +1.0
704,098 + +0.6
704,098 + +0.3
704,098 + +1.2
704,109 + -0.5
704,122 + +0.3
704,122 - -2.0
704,157 + -0.2
704,165 + BBR_RS13065 0.11 +1.2
704,180 - BBR_RS13065 0.13 -0.5
704,192 + BBR_RS13065 0.14 -1.2
704,192 + BBR_RS13065 0.14 +1.0
704,200 - BBR_RS13065 0.15 -0.9
704,219 + BBR_RS13065 0.17 +1.0
704,219 + BBR_RS13065 0.17 +0.5
704,219 + BBR_RS13065 0.17 +0.4
704,232 - BBR_RS13065 0.19 +0.2
704,264 + BBR_RS13065 0.23 +1.7
704,271 + BBR_RS13065 0.23 +0.3
704,271 + BBR_RS13065 0.23 +1.6
704,373 + BBR_RS13065 0.36 +0.9
704,381 - BBR_RS13065 0.37 -1.0
704,383 + BBR_RS13065 0.37 +0.5
704,424 + BBR_RS13065 0.42 -0.4
704,430 + BBR_RS13065 0.43 +1.1
704,436 - BBR_RS13065 0.43 -1.8
704,504 + BBR_RS13065 0.52 +0.0
704,512 - BBR_RS13065 0.52 -0.9
704,518 - BBR_RS13065 0.53 -0.0
704,534 + BBR_RS13065 0.55 -0.1
704,562 - BBR_RS13065 0.58 +0.7
704,567 - BBR_RS13065 0.59 -1.0
704,576 + BBR_RS13065 0.60 +1.3
704,605 + BBR_RS13065 0.64 +0.1
704,709 + BBR_RS13065 0.76 +1.0
704,711 + BBR_RS13065 0.76 +0.6
704,716 + BBR_RS13065 0.77 +0.4
704,719 - BBR_RS13065 0.77 -0.8
704,719 - BBR_RS13065 0.77 +0.2
704,724 - BBR_RS13065 0.78 -0.5
704,741 + BBR_RS13065 0.80 +1.3
704,741 + BBR_RS13065 0.80 -1.3
704,741 + BBR_RS13065 0.80 +1.6
704,748 + BBR_RS13065 0.81 +1.0
704,750 - BBR_RS13065 0.81 -1.1
704,754 + BBR_RS13065 0.82 +0.6
704,784 - BBR_RS13065 0.85 -1.3
704,898 + +1.2
704,958 + +0.9
704,958 + +0.8
704,969 + +0.6
705,022 + +1.0
705,025 + -0.8

Or see this region's nucleotide sequence