Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16440

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16435 and ABZR87_RS16440 are separated by 18 nucleotidesABZR87_RS16440 and ABZR87_RS16445 are separated by 171 nucleotides ABZR87_RS16435: ABZR87_RS16435 - hypothetical protein, at 40,417 to 41,475 _RS16435 ABZR87_RS16440: ABZR87_RS16440 - hypothetical protein, at 41,494 to 42,051 _RS16440 ABZR87_RS16445: ABZR87_RS16445 - sensor domain-containing diguanylate cyclase, at 42,223 to 43,769 _RS16445 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.511 kb on - strandat 40.511 kb on - strandat 40.513 kb on - strandat 40.531 kb on + strand, within ABZR87_RS16435at 40.532 kb on - strand, within ABZR87_RS16435at 40.672 kb on + strand, within ABZR87_RS16435at 40.672 kb on + strand, within ABZR87_RS16435at 40.672 kb on + strand, within ABZR87_RS16435at 40.672 kb on + strand, within ABZR87_RS16435at 40.720 kb on + strand, within ABZR87_RS16435at 40.721 kb on - strand, within ABZR87_RS16435at 40.812 kb on + strand, within ABZR87_RS16435at 40.857 kb on - strand, within ABZR87_RS16435at 41.197 kb on + strand, within ABZR87_RS16435at 41.197 kb on + strand, within ABZR87_RS16435at 41.198 kb on - strand, within ABZR87_RS16435at 41.198 kb on - strand, within ABZR87_RS16435at 41.200 kb on + strand, within ABZR87_RS16435at 41.201 kb on - strand, within ABZR87_RS16435at 41.290 kb on + strand, within ABZR87_RS16435at 41.291 kb on - strand, within ABZR87_RS16435at 41.291 kb on - strand, within ABZR87_RS16435at 41.291 kb on - strand, within ABZR87_RS16435at 41.338 kb on + strand, within ABZR87_RS16435at 41.339 kb on - strand, within ABZR87_RS16435at 41.339 kb on - strand, within ABZR87_RS16435at 41.353 kb on + strand, within ABZR87_RS16435at 41.353 kb on + strand, within ABZR87_RS16435at 41.354 kb on - strand, within ABZR87_RS16435at 41.498 kb on - strandat 41.498 kb on - strandat 41.509 kb on - strandat 41.632 kb on + strand, within ABZR87_RS16440at 41.632 kb on + strand, within ABZR87_RS16440at 41.632 kb on + strand, within ABZR87_RS16440at 41.633 kb on - strand, within ABZR87_RS16440at 41.641 kb on + strand, within ABZR87_RS16440at 41.641 kb on + strand, within ABZR87_RS16440at 41.641 kb on + strand, within ABZR87_RS16440at 41.642 kb on - strand, within ABZR87_RS16440at 41.642 kb on - strand, within ABZR87_RS16440at 41.642 kb on - strand, within ABZR87_RS16440at 41.642 kb on - strand, within ABZR87_RS16440at 41.642 kb on - strand, within ABZR87_RS16440at 41.731 kb on + strand, within ABZR87_RS16440at 41.753 kb on + strand, within ABZR87_RS16440at 41.825 kb on - strand, within ABZR87_RS16440at 41.825 kb on - strand, within ABZR87_RS16440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
40,511 - -0.0
40,511 - -0.7
40,513 - +0.3
40,531 + ABZR87_RS16435 0.11 -1.9
40,532 - ABZR87_RS16435 0.11 +0.1
40,672 + ABZR87_RS16435 0.24 +0.2
40,672 + ABZR87_RS16435 0.24 +0.6
40,672 + ABZR87_RS16435 0.24 +0.3
40,672 + ABZR87_RS16435 0.24 -0.5
40,720 + ABZR87_RS16435 0.29 -0.0
40,721 - ABZR87_RS16435 0.29 -0.8
40,812 + ABZR87_RS16435 0.37 -0.2
40,857 - ABZR87_RS16435 0.42 -1.0
41,197 + ABZR87_RS16435 0.74 -0.7
41,197 + ABZR87_RS16435 0.74 +0.2
41,198 - ABZR87_RS16435 0.74 -0.2
41,198 - ABZR87_RS16435 0.74 +0.4
41,200 + ABZR87_RS16435 0.74 +0.4
41,201 - ABZR87_RS16435 0.74 -1.9
41,290 + ABZR87_RS16435 0.82 +0.8
41,291 - ABZR87_RS16435 0.83 -0.1
41,291 - ABZR87_RS16435 0.83 +0.5
41,291 - ABZR87_RS16435 0.83 +0.1
41,338 + ABZR87_RS16435 0.87 +0.3
41,339 - ABZR87_RS16435 0.87 +0.9
41,339 - ABZR87_RS16435 0.87 -1.2
41,353 + ABZR87_RS16435 0.88 -0.6
41,353 + ABZR87_RS16435 0.88 -0.1
41,354 - ABZR87_RS16435 0.88 +0.4
41,498 - +0.5
41,498 - -0.2
41,509 - -0.1
41,632 + ABZR87_RS16440 0.25 +0.0
41,632 + ABZR87_RS16440 0.25 -0.5
41,632 + ABZR87_RS16440 0.25 -0.5
41,633 - ABZR87_RS16440 0.25 +0.5
41,641 + ABZR87_RS16440 0.26 +0.2
41,641 + ABZR87_RS16440 0.26 -0.1
41,641 + ABZR87_RS16440 0.26 -0.1
41,642 - ABZR87_RS16440 0.27 +0.3
41,642 - ABZR87_RS16440 0.27 -1.0
41,642 - ABZR87_RS16440 0.27 +0.3
41,642 - ABZR87_RS16440 0.27 -0.1
41,642 - ABZR87_RS16440 0.27 -0.5
41,731 + ABZR87_RS16440 0.42 -0.8
41,753 + ABZR87_RS16440 0.46 -0.7
41,825 - ABZR87_RS16440 0.59 -0.1
41,825 - ABZR87_RS16440 0.59 -0.3

Or see this region's nucleotide sequence