Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01595

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01590 and ABZR87_RS01595 are separated by 209 nucleotidesABZR87_RS01595 and ABZR87_RS01600 are separated by 12 nucleotidesABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotides ABZR87_RS01590: ABZR87_RS01590 - orotidine-5'-phosphate decarboxylase, at 334,246 to 335,061 _RS01590 ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233 _RS01595 ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950 _RS01600 ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888 _RS01605 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.534 kb on + strand, within ABZR87_RS01590at 334.534 kb on + strand, within ABZR87_RS01590at 334.535 kb on - strand, within ABZR87_RS01590at 335.114 kb on - strandat 335.211 kb on + strandat 335.211 kb on + strandat 335.212 kb on - strandat 335.216 kb on + strandat 335.217 kb on - strandat 335.412 kb on + strand, within ABZR87_RS01595at 335.412 kb on + strand, within ABZR87_RS01595at 335.412 kb on + strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.469 kb on + strand, within ABZR87_RS01595at 335.470 kb on - strand, within ABZR87_RS01595at 335.470 kb on - strand, within ABZR87_RS01595at 335.685 kb on + strand, within ABZR87_RS01595at 335.685 kb on + strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.703 kb on + strand, within ABZR87_RS01595at 335.704 kb on - strand, within ABZR87_RS01595at 335.861 kb on + strand, within ABZR87_RS01595at 336.105 kb on + strand, within ABZR87_RS01595at 336.105 kb on + strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.204 kb on + strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.309 kb on + strandat 336.309 kb on + strandat 336.310 kb on - strandat 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.390 kb on + strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.559 kb on + strand, within ABZR87_RS01600at 336.560 kb on - strand, within ABZR87_RS01600at 336.757 kb on + strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.886 kb on + strandat 336.886 kb on + strandat 336.887 kb on - strandat 336.931 kb on + strandat 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.186 kb on - strand, within ABZR87_RS01605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
334,534 + ABZR87_RS01590 0.35 -0.7
334,534 + ABZR87_RS01590 0.35 -2.8
334,535 - ABZR87_RS01590 0.35 -1.2
335,114 - -0.1
335,211 + -0.3
335,211 + -0.0
335,212 - -1.0
335,216 + -1.0
335,217 - +0.0
335,412 + ABZR87_RS01595 0.15 +0.6
335,412 + ABZR87_RS01595 0.15 +0.4
335,412 + ABZR87_RS01595 0.15 +0.7
335,413 - ABZR87_RS01595 0.15 -0.6
335,413 - ABZR87_RS01595 0.15 -0.0
335,413 - ABZR87_RS01595 0.15 -1.4
335,469 + ABZR87_RS01595 0.21 +0.8
335,470 - ABZR87_RS01595 0.21 -1.2
335,470 - ABZR87_RS01595 0.21 +0.4
335,685 + ABZR87_RS01595 0.43 +0.1
335,685 + ABZR87_RS01595 0.43 +0.1
335,686 - ABZR87_RS01595 0.43 -0.2
335,686 - ABZR87_RS01595 0.43 +0.1
335,686 - ABZR87_RS01595 0.43 -0.1
335,703 + ABZR87_RS01595 0.45 -0.4
335,704 - ABZR87_RS01595 0.45 -0.0
335,861 + ABZR87_RS01595 0.61 +1.0
336,105 + ABZR87_RS01595 0.87 +0.7
336,105 + ABZR87_RS01595 0.87 +0.2
336,106 - ABZR87_RS01595 0.87 -0.7
336,106 - ABZR87_RS01595 0.87 -0.7
336,106 - ABZR87_RS01595 0.87 +0.4
336,204 + +0.1
336,205 - -0.7
336,205 - -0.2
336,205 - -1.6
336,309 + +0.9
336,309 + +0.7
336,310 - +0.3
336,328 + ABZR87_RS01600 0.12 +0.4
336,328 + ABZR87_RS01600 0.12 +0.2
336,328 + ABZR87_RS01600 0.12 -1.2
336,328 + ABZR87_RS01600 0.12 -0.4
336,328 + ABZR87_RS01600 0.12 -0.1
336,328 + ABZR87_RS01600 0.12 +1.0
336,328 + ABZR87_RS01600 0.12 -0.2
336,328 + ABZR87_RS01600 0.12 +0.8
336,329 - ABZR87_RS01600 0.12 +0.3
336,329 - ABZR87_RS01600 0.12 -0.3
336,329 - ABZR87_RS01600 0.12 -0.3
336,329 - ABZR87_RS01600 0.12 -0.2
336,329 - ABZR87_RS01600 0.12 -0.3
336,329 - ABZR87_RS01600 0.12 +0.1
336,329 - ABZR87_RS01600 0.12 +2.2
336,390 + ABZR87_RS01600 0.20 -0.1
336,391 - ABZR87_RS01600 0.21 +0.0
336,391 - ABZR87_RS01600 0.21 +0.6
336,421 + ABZR87_RS01600 0.25 +0.3
336,421 + ABZR87_RS01600 0.25 -0.7
336,422 - ABZR87_RS01600 0.25 +0.1
336,422 - ABZR87_RS01600 0.25 +0.4
336,422 - ABZR87_RS01600 0.25 -0.2
336,481 + ABZR87_RS01600 0.33 +0.0
336,481 + ABZR87_RS01600 0.33 -0.5
336,482 - ABZR87_RS01600 0.33 -0.1
336,482 - ABZR87_RS01600 0.33 +0.4
336,482 - ABZR87_RS01600 0.33 +0.6
336,482 - ABZR87_RS01600 0.33 +0.5
336,559 + ABZR87_RS01600 0.44 -0.0
336,560 - ABZR87_RS01600 0.45 +1.0
336,757 + ABZR87_RS01600 0.72 +0.1
336,758 - ABZR87_RS01600 0.73 -0.0
336,758 - ABZR87_RS01600 0.73 +0.9
336,886 + +0.9
336,886 + -1.1
336,887 - -0.9
336,931 + +0.6
337,173 + ABZR87_RS01605 0.22 -1.6
337,173 + ABZR87_RS01605 0.22 -1.1
337,173 + ABZR87_RS01605 0.22 -2.2
337,173 + ABZR87_RS01605 0.22 -2.3
337,173 + ABZR87_RS01605 0.22 -2.6
337,173 + ABZR87_RS01605 0.22 -2.6
337,173 + ABZR87_RS01605 0.22 -3.1
337,173 + ABZR87_RS01605 0.22 -2.6
337,173 + ABZR87_RS01605 0.22 -2.3
337,173 + ABZR87_RS01605 0.22 -2.3
337,174 - ABZR87_RS01605 0.22 -1.9
337,174 - ABZR87_RS01605 0.22 -3.1
337,185 + ABZR87_RS01605 0.23 +0.5
337,185 + ABZR87_RS01605 0.23 -3.7
337,185 + ABZR87_RS01605 0.23 -1.5
337,186 - ABZR87_RS01605 0.23 -0.8

Or see this region's nucleotide sequence